Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1502 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACCCCGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGACCCCGACCTCGATTCCCTTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGGAACGTGCGGATTAGTGATGACCCACAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGTTGCAGTCAAGTCAGCCGCCGCAACAGCCACCCACCAGCGGTGGAGCCGCCGCTGCCGGCGGAGGATGGCCTTTTCCTTTCCACAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGTGA 669 52.77 MDPHHLPNPSSHLHHPAMEDHHIDLHHHHHDPDLDSLWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPPTSGGAAAAGGGWPFPFHKANGSTSSSTSMETTPAITPSGW 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28538282 28539046 - CmPI595203_01g015020.1 Cmu01g1502 407008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1502 222 Gene3D - 119 180 IPR036638 GO:0046983(InterPro)
Cmu01g1502 222 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
Cmu01g1502 222 MobiDBLite consensus disorder prediction 49 81 - -
Cmu01g1502 222 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 208 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1502 222 MobiDBLite consensus disorder prediction 174 222 - -
Cmu01g1502 222 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
Cmu01g1502 222 FunFam BHLH transcription factor 119 182 - -
Cmu01g1502 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 175 IPR036638 GO:0046983(InterPro)
Cmu01g1502 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
Cmu01g1502 222 CDD bHLH_AtIND_like 117 172 - -
Cmu01g1502 222 MobiDBLite consensus disorder prediction 200 222 - -
Cmu01g1502 222 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1502 Cmu-Chr1:28538282 Cmu02g1272 Cmu-Chr2:25901469 3.20E-35 dispersed
Cmu01g1502 Cmu-Chr1:28538282 Cmu08g1538 Cmu-Chr8:27224156 1.30E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5527 PF00010 HLH 1.30E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1502 - - - 0.0