Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1503 ATGAGTGGAAGTGGCAGAAAACGCTCGTCAAAATGGGATTTGAGAGAAGATTCTCACTTTGAAACTGACAGTGTGCAAGAACATAGTTGGCCTGGAAAAGAATCACGACCTGGTTGGGTTTCTCCTGAACTTGCAAGTGATGATGGTCCCAAGTGGTCTGGTATGGGGACCACCAATACCATTTCAAAACCTAAGCAAGATTGGGGATTGCAGTTGGAGGAACCTTTACCTGGAACCGGAGCTTCACATAAGGAGGATTACACTAATAAAGGCTATAATAAAAATATGGAAGGCACTGTTGAATGGGAAGCTGATGATAAAAGCTACGGCACAAGAATGTCTCCTGGTCTAGATGGATGGAGAAGACATAGCTCTAACCTGTCTGATAGAAATGATTGGAGCAGGTCAGTGAGGGGTAGGAGCAGAAGCCGGAGTTGGAGCAGAAGCCGGAGTAGAAGTAGAAGTCCTCATAGTTTTAAGCGGGACTCTGGATTTCATGATAGAAACAGAAACAGATCCCGTGTTTCAACTCAACTGTGCAGAGATTTTGCTTCTGGAAGATGCAGGCGAGGTAATGGTTGTCAATTTCTTCACCAGGACAATCAGAATCTGGATGATAGCTGGGAAAATAGGAACAGGAAGGGGGCCCGATCTTTAAGATCAACTCCCCATGATTTTAGGGACTATCCCAGGAGTGGAAGATCAGCTGCTCAATGTACCGATTTTGTGAAGGGAAGGTGCCATAGGGGTGCCTCTTGCAAGTATCCTCACGACAGTGCATTTCATGAACTATCACGAGGTTCTCCAAATGATATTAGCAGAGACAGGGACAATGATAGGAGTAAAGAAGCATACTTCTCACGTGGTGAGCGTGAACCTTGCAGTAGCAGTCTTGTTATCTGTAAATTTTTTGCTGCTGGAACTTGTCGTAATGGAAAAAATTGCAAATTTTCTCATCATAGCCAGCCGCGTGCAAGCCCAGAGAGGAAATCAAGTAGTGATAGATGGGAGCAGGTCCAATGTTCAGATGGTAGGGACCGGTTGTGGGATGGGACAAAATCAAGTGAATTGGCCAGCGGTTCCGATTTCACTCAGTTGAGAGAGGACAAAAGTGAACAAATTGCTAGTCAAGAACCGAGTTACACATGGCCTTCGGAACAAAAATGGGTTCATGGTTCGAACAATGAGAGCAAAACTCAGTGGGATCAAGCTGTTGGCATCAAGGCAGTTCAGAGCAACAAGAATGATACCATTCTGAGCAAGGCAGAGGACGCTGGTGGTTGCATAGGCACTTCTGACCCTCGAGGTCACAGAAAGTGGCCAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTGGTGAAAGGAGATTGCAACATTATGTCGGATTCTGGCTCTAAAACTTCCATGGCTTTAGCCACTCTTAGCCATGCGATAGTTCAAGAGGCTTTGGCTAAGAAGCAAGACATTGCCATAGAGCCTATATCAGTTGATAATACTCATTTTCGGCAAAGCCATAATTTAACAAAAGATGTTACCATTGCACCAGCATTCAATGATAAGATTACAATTGACAAAACAATTGTTTCACATGCTGAAGGCAATCCTTCTAGTAATATTGTCCTTGGACAAAGAATGGCATATCACACTGATCATCCAGGCAGAACCGTAGTGAATCCGAAAGTGTCAGATGGAAATCTCAGAGTTAAACAGCAGGATGAGGATGGAAGCATGCCAGGAATTAATTCTGGAACAACTATCACCCCAAACATAGTAACTAGCGAACAAATTACCCAATTAACTAACCTTTCTGTCTCTCTTGCACAATATTTTGGAAATGTGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACACATAGTGTGTCAGAAACACCTTCCTTCCCTTATTCTGATGCATCCATGGGTGCTTTGGGGCTATCGATGAAGTCGGGTTCATCAGGTCCTGTAATTGAATCCTCGAAGCAACAAGATTCTACTCTCTGCAATAGCTTGGAGCTGAAGAAGCTTGAAGTCACTAGAACACCTTCAGACTGTTTGCTGAATTCCGGTGGACAGAAAAACGCTACAGAAGTGAAGGATGAAGTACATATACCAAATTTGCCTCTATCATCTGATCCTTGTGACAAGATTGGCATCTCTGCTAAAGAAACTCTTCATAGGAGTGATGCAATAAATGATGGGAAGCCAGCAGCTGATGGTGAGGCTATCAGAGAGAAGAATGGTGATGGGGATAATGAGAACAAGACTGACCCAGAGGATTCTCAAGAGAATGATACTGCAGAAAATGCAAATGGGAATGATGGGGTCCATGATAAGAAGAAAAGTAAGGATGCTAAGGGAATTCGTGCTTTCAAATTTGCACTTGTGGAGTTTATCAAGGAACTTCTAAAACCTACATGGAAGGAAGGTCATATCAGCAAAGATGTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTGACAGGTACCTTGCAGGGGGGTCATATTCCTCAAACGCAGGAGAAAATTGATCACTATCTTTCATTTTCAAAACCAAAGCTCACCAAACTTGTTCAGGCGTATGTGGACCGAGTTCAGAAGACAACTTGA 2640 43.52 MSGSGRKRSSKWDLREDSHFETDSVQEHSWPGKESRPGWVSPELASDDGPKWSGMGTTNTISKPKQDWGLQLEEPLPGTGASHKEDYTNKGYNKNMEGTVEWEADDKSYGTRMSPGLDGWRRHSSNLSDRNDWSRSVRGRSRSRSWSRSRSRSRSPHSFKRDSGFHDRNRNRSRVSTQLCRDFASGRCRRGNGCQFLHQDNQNLDDSWENRNRKGARSLRSTPHDFRDYPRSGRSAAQCTDFVKGRCHRGASCKYPHDSAFHELSRGSPNDISRDRDNDRSKEAYFSRGEREPCSSSLVICKFFAAGTCRNGKNCKFSHHSQPRASPERKSSSDRWEQVQCSDGRDRLWDGTKSSELASGSDFTQLREDKSEQIASQEPSYTWPSEQKWVHGSNNESKTQWDQAVGIKAVQSNKNDTILSKAEDAGGCIGTSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNIMSDSGSKTSMALATLSHAIVQEALAKKQDIAIEPISVDNTHFRQSHNLTKDVTIAPAFNDKITIDKTIVSHAEGNPSSNIVLGQRMAYHTDHPGRTVVNPKVSDGNLRVKQQDEDGSMPGINSGTTITPNIVTSEQITQLTNLSVSLAQYFGNVQPLPQLYASLNTHSVSETPSFPYSDASMGALGLSMKSGSSGPVIESSKQQDSTLCNSLELKKLEVTRTPSDCLLNSGGQKNATEVKDEVHIPNLPLSSDPCDKIGISAKETLHRSDAINDGKPAADGEAIREKNGDGDNENKTDPEDSQENDTAENANGNDGVHDKKKSKDAKGIRAFKFALVEFIKELLKPTWKEGHISKDVYKTIVKKVVDKVTGTLQGGHIPQTQEKIDHYLSFSKPKLTKLVQAYVDRVQKTT 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28545795 28552310 - CmPI595203_01g015030.1 Cmu01g1503 407009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1503 879 SMART c3hfinal6 233 259 IPR000571 GO:0046872(InterPro)
Cmu01g1503 879 SMART c3hfinal6 174 200 IPR000571 GO:0046872(InterPro)
Cmu01g1503 879 SMART c3hfinal6 296 321 IPR000571 GO:0046872(InterPro)
Cmu01g1503 879 MobiDBLite consensus disorder prediction 322 352 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 141 155 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 1 93 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 264 287 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 214 231 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 424 443 - -
Cmu01g1503 879 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 9 877 IPR052650 -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 156 171 - -
Cmu01g1503 879 Pfam CCCH-type zinc finger 300 319 IPR041367 -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 734 791 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 52 66 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 734 771 - -
Cmu01g1503 879 Gene3D - 173 263 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 123 139 - -
Cmu01g1503 879 Pfam RNA-binding, Nab2-type zinc finger 238 255 - -
Cmu01g1503 879 Pfam RNA-binding, Nab2-type zinc finger 179 198 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 8 30 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 114 171 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 268 287 - -
Cmu01g1503 879 ProSiteProfiles Zinc finger C3H1-type profile. 295 322 IPR000571 GO:0046872(InterPro)
Cmu01g1503 879 SUPERFAMILY CCCH zinc finger 173 201 IPR036855 GO:0046872(InterPro)
Cmu01g1503 879 ProSiteProfiles Zinc finger C3H1-type profile. 174 201 IPR000571 GO:0046872(InterPro)
Cmu01g1503 879 MobiDBLite consensus disorder prediction 375 393 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 315 393 - -
Cmu01g1503 879 MobiDBLite consensus disorder prediction 214 233 - -
Cmu01g1503 879 Gene3D - 270 330 - -
Cmu01g1503 879 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872(InterPro)
Cmu01g1503 879 SUPERFAMILY CCCH zinc finger 297 320 IPR036855 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1503 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1503 Cmu-Chr1:28545795 Cmu06g1604 Cmu-Chr6:27249738 6.10E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1277 . . . . . . . Bma15g00800 . . . Cma07g00793 . Car07g00779 . Cpe19g00536 . Bhi03g01370 . . . . . . Cla01g01523 Cam01g1593 Cec04g1237 Cco04g1307 Clacu01g1617 Cmu01g1503 Cre04g1182 . . Cone6ag1291 . Lsi01g01141 . . Cme08g01076 . . . . . . . . . . Cmo07g00816 . . . . . . . . . . . . . . . . . . . . . Csa06g02790 Chy02g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002735 2 10 1 1 1 1 4 1 1 1 1 1 2 1 1 4 1 2 2 1 1 2 1 1 1 1 1 7 2 1 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5528 PF18044 zf-CCCH_4 8.70E-06 CL0537 Cmu TF