Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1508 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATTTCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCGGATTCCCTTCACCAACGACTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGCTTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCAGAGAACGATACAACCTTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATTCCGAAACGAATCAAAATCAAATTAATTCAGCTGGGAGTGATAAAATCAGTAACGAAGCTTCTCTCAGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGTTGTTAATGCAGAGCAATTGTTCGGCGCCGGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.51 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQRLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKMDRNCISSLLLLLRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISIPKRIKIKLIQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28626593 28627819 - CmPI595203_01g015080.1 Cmu01g1508 407014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1508 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Cmu01g1508 408 SUPERFAMILY RING/U-box 6 78 - -
Cmu01g1508 408 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cmu01g1508 408 CDD RING-Ubox_PUB 11 63 IPR045210 -
Cmu01g1508 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g1508 408 SUPERFAMILY ARM repeat 162 394 IPR016024 -
Cmu01g1508 408 PANTHER WDSAM1 PROTEIN 7 407 IPR045185 GO:0061630(InterPro)
Cmu01g1508 408 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g1508 408 Gene3D - 81 400 IPR011989 -
Cmu01g1508 408 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1508 Cmu-Chr1:28626593 Cmu07g0601 Cmu-Chr7:7815671 1.50E-30 dispersed
Cmu02g0047 Cmu-Chr2:502237 Cmu01g1508 Cmu-Chr1:28626593 2.20E-34 transposed
Cmu05g2712 Cmu-Chr5:35585810 Cmu01g1508 Cmu-Chr1:28626593 7.70E-28 transposed
Cmu08g1602 Cmu-Chr8:27684708 Cmu01g1508 Cmu-Chr1:28626593 1.40E-34 transposed
Cmu01g1508 Cmu-Chr1:28626593 Cmu02g0066 Cmu-Chr2:663475 3.70E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1508 - - - 0.0