Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1509 ATGACCCGAGACGGCGTACAATTTGAAGCCGCGAAACGATCATATCGGAATGCTAAGGCCGAGGGGAACCGGCACGAGGAAGCCAAATGGGCCAATGTAATCGGCAATATTTTGAAGAACAGAGGAGAATATGTAAAAGCCCTCAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAGTACTTACCTCAGAAGCATATGCTGGCAACGTGCCAGTCCCTGGGCGAGGTCTATCTTAGGCTCGAACACTTTAAAGATGCTTTAATTTATCAGAAGAAACATTTAGAGCTAGCCAAAAATGCTAATGACCTCGTGGAACAGCAAAGGGCTAACACTCAACTGGGTCGTACATACCATGAGCTATTTTTGAAATCTGACGATGATCATTTTTCAGTAAGAAATGCCAAAAAATATTTCAAGGCTGCCATGGAACTAGCAAAGTTTCTGAAAGAGCACCCACCAAAAATTGGATGTTCATTTCTCAAGGAGTATATTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAATTTGGAAGAGGCCAAAAAGATCTTAACGAAAGGACTAGAGATCTGCGAGGAAGAAGAGGTGGATGAAGATGATGATGGTCGCAGCAGGCTCCATCACAACCTAGGAAGTGTATATATGGAGCTAAGATTGTGGGATCAAGCTAAGAAGCATGTTGAGAAGGACATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAACTGCATTACAGGGTTCAAAAGTATGATGAAGCAATTCATTGCTATCGGAAGGCTCTTCATTTAGCAAAATCAATGGAAGATGAGGATGCTTTGGCGAGGCAAATTGATCAGAATATCAATACTGTTAAACAAGCTATACAAGTGATGGTTGAACTAAGAAAAGAAGAACAGAATCTTAAGAAGCTAATGAGGGAAATGGTCACTGCTAGAGGCACACCTCGTGAGCGCAAATGTCTACTGCAGCAAAATGCTTCTCTTGATTGCTTAATTGAAAAGTCAAGTACGATCTTTGCATGGATGCAGCATCTTGAATTTGCAAAAAGGAAGAAGAGAGTAGCGAGTGAACTCTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGGGAATCATATCAAAAACTAAGAAAATTCACAAAATCCATTAAATGGTATGTGAAGAGCTGGGAAGTATACAAGTCTATTGGTAATTCAGAGGGACAAGCACTGGCCAAGATTAATATTGGTGATGTTTACGACTGTGATGGTAAGTGGACAGAAGCACTAGATGCATTTGAGGAGAGTTACAGGATTGCTGGTGAGGCTAAACTTCCTTCCGTCCAGCTTTCAGCACTGGAGAACATGCATTATAGCCACATGATACGATTTGATAATGTAGAAGAAGCTAGGCGGTTACAGTCTCAAATTGACCAATTAAAAGAGAAAACGAAAAGTGGCAGTGAGACAAAATTTGTGGCAGAGGAGTGCTGCTCTGAAACTGATACAGAAATAAATGAGGCTCTGTCAGACAGTCCATCTGATGAGTGCTCCTTGTTAGAAACTAGAAAATCTTGTAACAGCAGATTTAATTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACGCAGTTACTTTTACTTCACCCCCCAAACGGCATGAAAGGTCACCTAAAATCAAATCAATTGACATGGAAAAATGCAATACTAATTCTAACCCATCTGAAATATCACCTAAAAGTTTGTCTAAGTCAGTTGGTAGCCAACAAACAACCATTGGCCGTAAACGTGTTCGTGTGATTCTCTCTGATGATGAGGGTGAGGATGAAATGATGGATTTCTCAAAATCAAGGCCTCATTTATGCCGGGGAGAGAATTCTGCAACTTCTGATGACAACATGAATAAACAATACTCAGGAAATCCTGCAGCTGAAATTAAGGAGGGTTCAGCAACTACCAGCAAACATGCAAGCAAGTCTTACGAAGACATTGAAGAAAGCACTGGTTCATATAAATACAAGAGTCGAATCATCGCTGCTCAAAATCATAAAATTTTTGGAACCCCAAATGCTGATGAAAATTTCCCTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCTGAAAATCTGTTCCATAAATATAATGCTACCAAGTCAAACCCTTCTGAGCAGGGTGAATGTGTTACATTCAAAGTTGATAATGAGCTGATATATGTAGAGGTTGCTGTATTTAGCGATATGATAAGCATCGAATCTGCAAAGGAAGAACTAGCATGCATGTACTATCTACAACTTCCCTTTGAAAAGAGATCAGAGGGTCTGTTACCTGTGATTCAACATATAAGTCATGATGGGAGAACTCTGGAGACCCTTGAATTTTCAAAAACCTCCGACCATGGGAAGAATCTTTTGTTCGAAGCTGTGGTCAATGGATGGGTTTCAAAACCCTTGATAAAACTCTACATTGACTACTGCAAGGAGTTATCTGAGGCACCTAACATGAAGCTGCTGAAGAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCAGTGTCTGATTGTGATTTGCAAGACTTATCTATAAGTCCATTATTGAATGCGCTGCACACCCAGAAAACTTTTGCCATCTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTCTTCAAGCAGTCCAGCCAGACACATGACTTAACGTTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATTCCAGATTTGTGAATGCCCTATTCTGTTCACTCGATTGGAAGTGCTTAACATATCTGGAAATCGCCTCACTGACGCTTGCGGGTCATACCTGTCAACTATCTTAAAAAATTGCAAAGGTCTTTGGAGCTTGAACATCGAACGATGTTCCATCACATCTAGAACAATTCAGAAGGTTGCTGATGCACTGGAAGTTGGAGCGTCCCTGGAAAAGCTCTATATTGGATACAACAACTCAATCTCTGGAAATGCACTCAGTAGTTTATTTGTTAAGCTCACAGTACTGAATAGGTTTACTAGTCTTAGTCTAAGTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAGCTTATTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATGATGCTGCATTAGGGATAACTGAGTCGTTTAGCGGAAGTGAAGAGCTTGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAGTACCTTGTTAAATTCGGTGGCTGCATTTCTATTATACAACGCATTCATGAGCTGAACCTTGCAGGGAATGCTATCATGCAAGAGGGTTGTAATGCAGTATCGTCACTAATAGCTAACCCTCAATGTGGCATTAAAGTCTTGGCTCTCAACAAGTGCCAGCTTGGCCTAGCTGGAGTTGTTCAAATCATTCAGGCCGTAGCAGGTAACCACTGTCTTGAAGAGCTCAATCTTGCTGATAACGTTGATCTCGATAAACATGCTCTGCAATGTAACATAATAGAGAAAGAAAGTAAACAACTTATACAACCATGTCATGACATATCTAAGCCTCATGACCTAACATGTTCAATCAAGGAATTGGACACTGCTCAACAGAATTTAGAGGAGTTTAACACTGAATACAATCAGCTTGAAGTTGCTGATAGTGAAGAACCAATTAAAGAAACTGCAGCATCTGGTATCGATGATAGTTGTACAAGTTCATGTGAAAGAAAATCCGCATCTCTTGATTGCCAGTTTATTTTATCACTTTCAACTGCAATTGGGATGGCAAAGACATTGCAATTACTGGATCTTAGCAATAATGGGTTTTCTGCCCAAGAGACGGAAACAATATTCTGTGCATGGTCAACTTCGAGAACTGATTTGCCCCAAAGACATATTAAGGACAACATAAATCCTTCGATGAAGACCGCGGCAAGATGGCGAGGATTGAAGAGGGAGCCTAAAATTACTTTGATGAACACAAGTCACGGGTGGACTGACTTATGGGATGTGGAGGAAAGTATTCTTTAA 4095 40.54 MTRDGVQFEAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEHFKDALIYQKKHLELAKNANDLVEQQRANTQLGRTYHELFLKSDDDHFSVRNAKKYFKAAMELAKFLKEHPPKIGCSFLKEYIDAHNNLGMLEMDLDNLEEAKKILTKGLEICEEEEVDEDDDGRSRLHHNLGSVYMELRLWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKQAIQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDCLIEKSSTIFAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYQKLRKFTKSIKWYVKSWEVYKSIGNSEGQALAKINIGDVYDCDGKWTEALDAFEESYRIAGEAKLPSVQLSALENMHYSHMIRFDNVEEARRLQSQIDQLKEKTKSGSETKFVAEECCSETDTEINEALSDSPSDECSLLETRKSCNSRFNSSKSLADLEEPNDAVTFTSPPKRHERSPKIKSIDMEKCNTNSNPSEISPKSLSKSVGSQQTTIGRKRVRVILSDDEGEDEMMDFSKSRPHLCRGENSATSDDNMNKQYSGNPAAEIKEGSATTSKHASKSYEDIEESTGSYKYKSRIIAAQNHKIFGTPNADENFPSDSAASGSKFEVDISENLFHKYNATKSNPSEQGECVTFKVDNELIYVEVAVFSDMISIESAKEELACMYYLQLPFEKRSEGLLPVIQHISHDGRTLETLEFSKTSDHGKNLLFEAVVNGWVSKPLIKLYIDYCKELSEAPNMKLLKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALFQICECPILFTRLEVLNISGNRLTDACGSYLSTILKNCKGLWSLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLTVLNRFTSLSLSGLKLSKPVMEGLLQLIKSLGLSGLMLGGTGIGDDAALGITESFSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRIHELNLAGNAIMQEGCNAVSSLIANPQCGIKVLALNKCQLGLAGVVQIIQAVAGNHCLEELNLADNVDLDKHALQCNIIEKESKQLIQPCHDISKPHDLTCSIKELDTAQQNLEEFNTEYNQLEVADSEEPIKETAASGIDDSCTSSCERKSASLDCQFILSLSTAIGMAKTLQLLDLSNNGFSAQETETIFCAWSTSRTDLPQRHIKDNINPSMKTAARWRGLKREPKITLMNTSHGWTDLWDVEESIL 1364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28656889 28670069 - CmPI595203_01g015090.1 Cmu01g1509 407015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1509 1364 SUPERFAMILY TPR-like 12 121 IPR011990 GO:0005515(InterPro)
Cmu01g1509 1364 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Cmu01g1509 1364 SUPERFAMILY HCP-like 245 448 - -
Cmu01g1509 1364 MobiDBLite consensus disorder prediction 632 667 - -
Cmu01g1509 1364 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 Coils Coil 164 198 - -
Cmu01g1509 1364 MobiDBLite consensus disorder prediction 559 573 - -
Cmu01g1509 1364 Gene3D Tetratricopeptide repeat domain 335 497 IPR011990 GO:0005515(InterPro)
Cmu01g1509 1364 Gene3D Tetratricopeptide repeat domain 5 315 IPR011990 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 248 281 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 28 61 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 68 101 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 419 452 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 208 241 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 165 198 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 SMART tpr_5 379 412 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 MobiDBLite consensus disorder prediction 608 630 - -
Cmu01g1509 1364 FunFam Protein TONSOKU 2 156 - -
Cmu01g1509 1364 SUPERFAMILY RNI-like 865 1297 - -
Cmu01g1509 1364 MobiDBLite consensus disorder prediction 574 606 - -
Cmu01g1509 1364 SUPERFAMILY TPR-like 160 285 IPR011990 GO:0005515(InterPro)
Cmu01g1509 1364 Coils Coil 298 328 - -
Cmu01g1509 1364 MobiDBLite consensus disorder prediction 545 675 - -
Cmu01g1509 1364 Pfam Tetratricopeptide repeat 166 196 IPR019734 GO:0005515(InterPro)
Cmu01g1509 1364 PANTHER PROTEIN TONSOKU 1 1325 IPR044227 GO:0005634(InterPro)|GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0009933(PANTHER)|GO:0009933(InterPro)|GO:0040029(InterPro)|GO:0072423(InterPro)
Cmu01g1509 1364 Pfam Tetratricopeptide repeat 209 279 - -
Cmu01g1509 1364 Pfam Tetratricopeptide repeat 381 449 - -
Cmu01g1509 1364 Coils Coil 1213 1240 - -
Cmu01g1509 1364 SMART LRR_RI_2 944 971 - -
Cmu01g1509 1364 SMART LRR_RI_2 1141 1168 - -
Cmu01g1509 1364 SMART LRR_RI_2 1112 1139 - -
Cmu01g1509 1364 SMART LRR_RI_2 886 913 - -
Cmu01g1509 1364 FunFam Protein TONSOKU 838 1209 - -
Cmu01g1509 1364 Gene3D Ribonuclease Inhibitor 836 1342 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1509 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31