Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1515 ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTCGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCCGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 48.24 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28733294 28734736 + CmPI595203_01g015150.1 Cmu01g1515 407021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1515 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmu01g1515 377 Gene3D - 10 371 - -
Cmu01g1515 377 PRINTS Actin signature 51 62 IPR004000 -
Cmu01g1515 377 PRINTS Actin signature 63 85 IPR004000 -
Cmu01g1515 377 PRINTS Actin signature 142 161 IPR004000 -
Cmu01g1515 377 PRINTS Actin signature 28 37 IPR004000 -
Cmu01g1515 377 PRINTS Actin signature 117 130 IPR004000 -
Cmu01g1515 377 PRINTS Actin signature 238 254 IPR004000 -
Cmu01g1515 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmu01g1515 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmu01g1515 377 FunFam Major actin 261 340 - -
Cmu01g1515 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmu01g1515 377 FunFam Actin, muscle 182 273 - -
Cmu01g1515 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cmu01g1515 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmu01g1515 377 SMART actin_3 7 377 IPR004000 -
Cmu01g1515 377 FunFam Putative actin-related protein 5 341 369 - -
Cmu01g1515 377 Gene3D - 140 340 - -
Cmu01g1515 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmu01g1515 377 Pfam Actin 5 377 IPR004000 -
Cmu01g1515 377 FunFam Actin, alpha skeletal muscle 3 180 - -
Cmu01g1515 377 PANTHER ACTIN 8 369 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1515 Cmu-Chr1:28733294 Cmu10g2489 Cmu-Chr10:31536873 2.00E-215 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu01g1515 Cmu-Chr1:28733294 1.60E-212 transposed
Cmu11g0783 Cmu-Chr11:8388189 Cmu01g1515 Cmu-Chr1:28733294 4.40E-97 transposed
Cmu01g1515 Cmu-Chr1:28733294 Cmu02g0070 Cmu-Chr2:722978 1.00E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1515 K10355 - csv:101215469 758.059