Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1520 ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTTGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCATCACCTTTTGAAATTTCACAACTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAAACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTATGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCATTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAATCCAATCTTTTGTGATAGCTATTGCAATGGAAAGAGATCCTTCCGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGCGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTGATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAATAATAATCAAACAGATGTATTCGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACCTGCTGAGCCATAG 1026 39.28 MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHNSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTIQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVFVPPQLPKDLTEMRSPAEP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28768625 28772873 - CmPI595203_01g015200.1 Cmu01g1520 407026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1520 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
Cmu01g1520 341 PANTHER WAT1-RELATED PROTEIN 1 314 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu01g1520 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 306 - -
Cmu01g1520 341 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020(InterPro)
Cmu01g1520 341 Pfam EamA-like transporter family 10 121 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1520 Cmu-Chr1:28768625 Cmu01g1522 Cmu-Chr1:28804322 3.10E-114 dispersed
Cmu01g1517 Cmu-Chr1:28746456 Cmu01g1520 Cmu-Chr1:28768625 2.70E-113 proximal
Cmu01g1520 Cmu-Chr1:28768625 Cmu01g1521 Cmu-Chr1:28782420 3.30E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1520 - - - 0.0