Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1559 ATGAAGCTCGAGATGAATGGCGGATATTTTCGATTGAAGAGACATAAGTTAGTTTACTTCCATGGAACTTTGTGTGAAGCTCTTAGACTATATCCTCCAATCCCAATCAATCACAAGGTGGTTGTACAACATGATATCCTCCCAAGTGGTCATCGCATAAATCTCAAAATGAAGATATTGTTGTCTATATATGCATTGGGAAGAATGAGTGTTGTGTGGGGAAAAGATTGCATGGAGTTCAAGCCAGAGAGATGGATTTCAGAAAAGGGAAAGATCAAACATGTGCCATCTTACAAATTCTTGGCCTTCAATCCTGGGCCAAGAACTTGTTTGGGAAAACAAGTGGCTTTCACTGAGTTGAAAATCGTTGCAGCTGCCATTATTCATAACTACAAGATTATTCAACAAAAAGGACACCAAGTTGTTCCAAAGGCTTCCGTTGTTCTTCATATGAAGCATGGTTTCAAGGCCAGGATTATAAGGAGATGGACTTGA 495 39.6 MKLEMNGGYFRLKRHKLVYFHGTLCEALRLYPPIPINHKVVVQHDILPSGHRINLKMKILLSIYALGRMSVVWGKDCMEFKPERWISEKGKIKHVPSYKFLAFNPGPRTCLGKQVAFTELKIVAAAIIHNYKIIQQKGHQVVPKASVVLHMKHGFKARIIRRWT 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29217169 29217663 + CmPI595203_01g015590.1 Cmu01g1559 407065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1559 164 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 103 112 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cmu01g1559 164 Gene3D Cytochrome P450 11 163 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu01g1559 164 PRINTS E-class P450 group I signature 100 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu01g1559 164 PRINTS E-class P450 group I signature 110 133 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu01g1559 164 PRINTS E-class P450 group I signature 21 39 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu01g1559 164 Pfam Cytochrome P450 14 145 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu01g1559 164 PANTHER CYTOCHROME P450 15 155 - -
Cmu01g1559 164 SUPERFAMILY Cytochrome P450 14 162 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1559 Cmu-Chr1:29217169 Cmu09g0434 Cmu-Chr9:4086440 9.20E-40 dispersed
Cmu01g1558 Cmu-Chr1:29207104 Cmu01g1559 Cmu-Chr1:29217169 6.20E-73 tandem
Cmu01g1559 Cmu-Chr1:29217169 Cmu01g1560 Cmu-Chr1:29228047 1.40E-67 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1559 - - - 0.0