Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g1572 | ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGCCTGTTCACATCATGCTACTGGGAAACTTCTTTACCCCACATCATGCTACTGGGAAACTTCTTTACCCCAACAGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAGAATTACAATTGACTTTGCATTTGAAATTGAATTGTAG | 858 | 40.56 | MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWWPVHIMLLGNFFTPHHATGKLLYPNSLIFVVLHLLLVLNQSLVCCARITIDFAFEIEL | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29352878 | 29354183 | + | CmPI595203_01g015720.1 | Cmu01g1572 | 407078 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g1572 | 285 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 17 | 88 | - | - | |
Cmu01g1572 | 285 | SUPERFAMILY | RING/U-box | 30 | 87 | - | - | |
Cmu01g1572 | 285 | Pfam | Zinc finger, C3HC4 type (RING finger) | 33 | 74 | - | - | |
Cmu01g1572 | 285 | CDD | RING-HC_AtRMA-like | 32 | 76 | - | - | |
Cmu01g1572 | 285 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
Cmu01g1572 | 285 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 88 | IPR013083 | - | |
Cmu01g1572 | 285 | SMART | ring_2 | 34 | 74 | IPR001841 | - | |
Cmu01g1572 | 285 | MobiDBLite | consensus disorder prediction | 98 | 120 | - | - | |
Cmu01g1572 | 285 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 75 | IPR001841 | - | |
Cmu01g1572 | 285 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 12 | 220 | IPR045103 | GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
Cmu01g1572 | 285 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1572 | Cmu-Chr1:29352878 | Cmu10g2495 | Cmu-Chr10:31599785 | 9.40E-24 | dispersed | |
Cmu01g1572 | Cmu-Chr1:29352878 | Cmu08g1475 | Cmu-Chr8:26753726 | 2.80E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g1572 | K10666 | - | csv:101205026 | 449.514 |