Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1588 ATGATCGTGTCGACCACTTCTCTCACCAGCTTCCAAGGAGGGGATGATTCTGTTTGTTCCTTGTTCAGTTGGAGTAAGTTGCAGTCAATTATGACTTTGCATCGAAACTTTTTGATCGTTGTAATCGCTATTTTCTCGGCTTCTTTAACAATCGCCGAGGAGTTGAGGTCCTGCGAAACCGGAAATTGGGCTGAATCTGTACGCTATCCGTTTGGATTCTCAAACTCGAGCCTAATCAAATTGAATTGCAGCAAAAATGGCGAGATTCAAATCGGCAGATTCCAGGTCCAGAACATTACTGAAAGGAGCATCCTCATCAAACTTCCTACAGAGTGCAATATCTCTATCAATTCAATTTCAGAATTGTCCAGCCCAAACTACAAGCCCACTCTCCGCAACAGTCTCCTGTTGAATTGTACCGAACAACCACTGCCATGCGGAGTAATGGCCAATTTGAGCCTGAATCAGCCAACGGACTGCGGCTTCAAGAGTAACAATCTCAGCTGCTTCACCAGGACCGAGCAAAATGGATTTCTGCCTCCTTTAAATAAGTGCCACTCCCTTCTGTCCTCCGTATTCGTTAATTTTACGTCAAAATCAACCTCTTCGTTCGAGGTCGAGTTTGGGGTCATTGAGTTAGAGTGGTGGCTCTCACCTTTGCCTTCCGTACGATGCTCAAAAAATGCCAATCGCGCGAACATTACCAGCTTGACGGAGAACCTAGGATTTCGTTGCCAGTGCATAGAAGGGTTTGAAGGAAATGCCTATGGCGACGTCGGCGGCGGCTGCCGGAAAGTTTCTCACAAGTGCAATACTTCAACATGCATTACTGGCCGATGTGGCGGAAGCAAAGTCACTGCTCTAATCGCAGGTGTCGTTGTTGGGGCTTTTCTAATGGCTGTCTTGACCCTTATCTGTTACTGCATCCGACGCCGCTCAATGTGTCTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCTGCCGGAAATTCCAGTGTTACTTTATATCCCTACAAAGAAATAGAAAGAGCCACTAATGGCTTCTCTGAGAAACAAAGGCTGGGAACTGGAGCCTTCGGTACAGTCTATGCCGGAAGGCTTCACGAGGACGAGTGGGTTGCTGTAAAAAAGATCAAATATAGAGACCACAATAGCATTGAACAGGTTATGAATGAGATAAAACTGCTTTCCTCGGTGAGCCACCCAAATCTGGTCCGCTTGCTTGGCTGCTGCATTGAGGAAGGCCAACAGATCCTTGTCTATGAGTTTATGCCCAATGGAACTCTCTCTCAGCATCTTCAGAGAGAGCGTGGAAATGGACTCCCATGGACGACACGTCTCACCATTGCAGCCGAAACTTCTCGTGCAATAGCATACCTCCATTCTTCTGTGCATCCACCAATATATCATAGAGACATCAAATCGAGCAATATACTTCTGGATCATGGTTTCAAATCAAAAGTTGCAGATTTTGGTCTTTCACGACTTGGTATGACAGAAATATCACACGTCTCAACAGCTCCACAAGGCACCCCTGGTTACGTTGATCCACAATACCATCAAAATTTTTATCTTTCAGATAAAAGTGATGTATATAGTTTTGGAGTAGTCCTCGTAGAGATAATAACAGCATTAAAAGTGGTTGATTTCACTCGTCCCCAGAGTGAAGTGAACTTAGCTGCACTTGCCATTGATAGGATTGGGAGAAATTCTGTGGATGAATTAATTGATCCTTTCCTCGAGCCACATAGAGATGCTTGGACCCTATACTCTATTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCTTTCCACAGTGACATGAGGCCTTCGATGACAGAAGTAGCAGAGGAATTGGAAAACATCAGACGCAGCGGGTGGACATCAATGGAGGAGCATTTTTGTGCAGCATCATCAGCAGGGTCGGCTTGCTCATCTCCTCGTAGTCTAAGCGAGAGATCCATAAGTAGCATTACAATTAAGAAGGCCGGGTTGCTTGCAGGACTGGGGAGCCAGAGATTGATAATCCCGCCGGATAACAACCATACGAAGGACTATCTGCCTCCTGTTGAGGAGGTTATGGATAGTTCCCCAGTTTCAATACAGGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGGTAATGTAGCACAGTGA 2181 45.67 MIVSTTSLTSFQGGDDSVCSLFSWSKLQSIMTLHRNFLIVVIAIFSASLTIAEELRSCETGNWAESVRYPFGFSNSSLIKLNCSKNGEIQIGRFQVQNITERSILIKLPTECNISINSISELSSPNYKPTLRNSLLLNCTEQPLPCGVMANLSLNQPTDCGFKSNNLSCFTRTEQNGFLPPLNKCHSLLSSVFVNFTSKSTSSFEVEFGVIELEWWLSPLPSVRCSKNANRANITSLTENLGFRCQCIEGFEGNAYGDVGGGCRKVSHKCNTSTCITGRCGGSKVTALIAGVVVGAFLMAVLTLICYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATNGFSEKQRLGTGAFGTVYAGRLHEDEWVAVKKIKYRDHNSIEQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRNSVDELIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMTEVAEELENIRRSGWTSMEEHFCAASSAGSACSSPRSLSERSISSITIKKAGLLAGLGSQRLIIPPDNNHTKDYLPPVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAQ 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29529011 29533143 - CmPI595203_01g015880.1 Cmu01g1588 407094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1588 726 SMART serkin_6 350 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1588 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1588 726 SUPERFAMILY Protein kinase-like (PK-like) 330 623 IPR011009 -
Cmu01g1588 726 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Cmu01g1588 726 ProSiteProfiles Protein kinase domain profile. 350 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1588 726 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524(InterPro)
Cmu01g1588 726 MobiDBLite consensus disorder prediction 703 726 - -
Cmu01g1588 726 FunFam Wall-associated receptor kinase-like 20 426 635 - -
Cmu01g1588 726 Pfam Protein tyrosine and serine/threonine kinase 353 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1588 726 FunFam Wall-associated receptor kinase-like 14 317 425 - -
Cmu01g1588 726 CDD TM_EGFR-like 282 313 - -
Cmu01g1588 726 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 54 712 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cmu01g1588 726 Gene3D Transferase(Phosphotransferase) domain 1 426 642 - -
Cmu01g1588 726 MobiDBLite consensus disorder prediction 697 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1588 Cmu-Chr1:29529011 Cmu11g0669 Cmu-Chr11:7376180 9.90E-78 dispersed
Cmu01g1588 Cmu-Chr1:29529011 Cmu08g1482 Cmu-Chr8:26796714 4.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75220 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1588 - - - 0.0