Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1614 ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCTTCAATGGTGAGAATTCCGGGAACTGGCACAGGTGGTGATTCTCCAACCAGAAGGACTACTACCAGAGGCTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGACGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCTGAGCCTGTCTCTTTGTCGCGATCGCCGAGTACTTCTGATGACCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCCCTTATTTCAGCGTCGTGAAGGAATCTCCAATTTGAATTCTGCAGGTGGAGATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGACGCGGTGGGGACGATCGCGATGTAGATAGAGATAGAACTACACCTCCTCATAAGATTGGGGGTGCGGCCTCCCCTACCGCTCCGATTAAAAGTATATCTGATTCCGGGGAAAAGCAGAAGAAAGAAGATCAGAATGAGACGAGGTCATCTGAGAGGGCGAATCAAGATGCAAGAGGATATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGTCCCCAAAGAAATAGGTCCGGTAACCTTTCAAATTTCTATCATGTGATTCCAGTAGGAAACCAAGGCTGGTCTTCACCTGAGCTACCAAGTTTCCCTTGTGCTGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCGTTCTTTGATTGCTCCACTCTTAGTTCTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCAACAGGAGCTACGTCTCCATTGCACACCAAGATTTCCCTTGAAACACATGCTGTGCGCCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCCCCTGGAGTGCCAATGCCTTCAGCATCAATCCTATCAATGGCTTCACCATCAACCTCCATGCCTCTACAATCAACCCCTGTGCCTTCCCCATCAATTCCAATGCCTTCAGCATCATCCCCAATGGCTTCACCATCAACCCCAATGGCTTCACAATCAACCCCAATTACACAAGCTAACACCAAAACTGAGTCGACCTCAATGAAAAATAAATGGCAGAAAGGAAAGCTTATAGGCCGGGGCACATTTGGAAGTGTATATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGATGATCCGAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTTGGCACATTCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTCTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTACTTCTGTCTGTGATGCAGAAAGATAACAGCCCAGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGTGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATAAGAGATACCCCACCAATACCTGAAACCTTATCATATGAAGCCAGCGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGACCGACTGCTGCAATGCTGCTTGAACATCCATTCATGAAAAACTTGCAGCATCCAGATGCTTCATCTTGCTCTCAGGCCGTTGCTGGGGCAAGTTTGATGGATAAATGCTATAGCCCAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAACTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCCACCATCTCGTCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAATACTATCTCCTCCGCGCTCGGTTCCAAATGTGCACCATCTCGGTTCCCCTACAAATGTGGCCGGCCTGCCTCCAGCTTTGCTCGCACCTTCAATCGATGAGCATTTGGCAAGGGTGGTAAAGTATCCGCGAAAGCTCAGCTTCATGACAAGAAGCCAGACTCAGATGCTGCGTCTAGTAGTTGTTCTTGCTGTTATGACTGCTCGGAAAGCTGGTTTCATTACTTGTGCTGTTGGGATGATTGTGAGTGTTAGATTAATTGGGATTAGCAACAATCTGTCGTTTCTTTAA 2556 46.87 MRWLRNISFTPSSMVRIPGTGTGGDSPTRRTTTRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERDATSLAKWSDTTPEPVSLSRSPSTSDDHAVPLPLPEVSPLFQRREGISNLNSAGGDGDCPLPSPKGWRGRGGDDRDVDRDRTTPPHKIGGAASPTAPIKSISDSGEKQKKEDQNETRSSERANQDARGYPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNRSGNLSNFYHVIPVGNQGWSSPELPSFPCAAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSESSPMHSPRGRSPTGATSPLHTKISLETHAVRREGSGHVSVHPLPLPPGVPMPSASILSMASPSTSMPLQSTPVPSPSIPMPSASSPMASPSTPMASQSTPITQANTKTESTSMKNKWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTWHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVIRDTPPIPETLSYEASDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDASSCSQAVAGASLMDKCYSPSKQYSSKFDQSSMLPSSQNSKGKLAAESVIGPPSRHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNVAGLPPALLAPSIDEHLARVVKYPRKLSFMTRSQTQMLRLVVVLAVMTARKAGFITCAVGMIVSVRLIGISNNLSFL 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29842127 29850264 + CmPI595203_01g016140.1 Cmu01g1614 407120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1614 851 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Cmu01g1614 851 MobiDBLite consensus disorder prediction 353 409 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 13 39 - -
Cmu01g1614 851 ProSiteProfiles Protein kinase domain profile. 410 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1614 851 SMART serkin_6 410 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1614 851 Pfam Protein kinase domain 411 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1614 851 MobiDBLite consensus disorder prediction 291 311 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 213 229 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 135 152 - -
Cmu01g1614 851 SUPERFAMILY Protein kinase-like (PK-like) 394 715 IPR011009 -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 703 722 - -
Cmu01g1614 851 Gene3D Transferase(Phosphotransferase) domain 1 406 710 - -
Cmu01g1614 851 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 150 677 IPR050538 -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 703 737 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 13 30 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 73 93 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 64 229 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 377 409 - -
Cmu01g1614 851 MobiDBLite consensus disorder prediction 170 191 - -
Cmu01g1614 851 FunFam Mitogen-activated protein kinase kinase kinase 5 407 708 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0446 Cmu-Chr1:4611527 Cmu01g1614 Cmu-Chr1:29842127 9.00E-97 dispersed
Cmu01g1614 Cmu-Chr1:29842127 Cmu05g0923 Cmu-Chr5:8407934 7.30E-96 dispersed
Cmu01g1614 Cmu-Chr1:29842127 Cmu08g1494 Cmu-Chr8:26874659 1.30E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75221 PF00069 Pkinase 2.70E-68 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1614 - - - 0.0