Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1638 ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACCATCAATTTCGCCACGCCTTCCAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCGCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGATAGAATACAGAGCCGCGGTGGTCGCCTACCGGAATTTGAAGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAGCGATAACGAGTTTGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAGAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACGTCGCCGAGATGCCCTTTCGACTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGGGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA 1071 48.09 MEWVRGDEIGHGSFATINFATPSNTYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVSDNEFESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30103459 30104529 + CmPI595203_01g016380.1 Cmu01g1638 407144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1638 356 SMART serkin_6 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1638 356 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Cmu01g1638 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524(InterPro)
Cmu01g1638 356 Gene3D Transferase(Phosphotransferase) domain 1 96 317 - -
Cmu01g1638 356 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1638 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 274 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu01g1638 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1638 356 CDD STKc_MAPKKK 2 273 - -
Cmu01g1638 356 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1638 356 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1638 Cmu-Chr1:30103459 Cmu09g1042 Cmu-Chr9:10509640 2.20E-62 dispersed
Cmu04g0276 Cmu-Chr4:7346356 Cmu01g1638 Cmu-Chr1:30103459 9.30E-27 transposed
Cmu09g0497 Cmu-Chr9:4593687 Cmu01g1638 Cmu-Chr1:30103459 3.50E-56 transposed
Cmu09g1075 Cmu-Chr9:10943964 Cmu01g1638 Cmu-Chr1:30103459 5.30E-54 transposed
Cmu01g1638 Cmu-Chr1:30103459 Cmu02g1236 Cmu-Chr2:25328246 1.30E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75223 PF00069 Pkinase 5.80E-54 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1638 - - - 0.0