Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1643 ATGGACCATTCCATTCCCAACAACTGCGATGGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTCCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGCTCAATGTCTTCTGACCAAGAAAGACCGAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAAATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGAATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATAATATATCGGCGCCTCCTGATTTACAAGGATTAAAGAATTGCGTCTCAGTGGAACCAAGCATCATAGAAGGAAATCGGTCAGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGATCAACATTGTTGA 1203 47.63 MDHSIPNNCDGNACTSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSAPHSSLLSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENSSMSSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMNVSQSETTPFMSHPYNISAPPDLQGLKNCVSVEPSIIEGNRSALTQEDQLKQQSCNDQHC 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30130075 30132230 - CmPI595203_01g016430.1 Cmu01g1643 407149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1643 400 Coils Coil 211 231 - -
Cmu01g1643 400 CDD bHLH_AtPIF_like 172 234 IPR047265 -
Cmu01g1643 400 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Cmu01g1643 400 MobiDBLite consensus disorder prediction 168 184 - -
Cmu01g1643 400 MobiDBLite consensus disorder prediction 98 184 - -
Cmu01g1643 400 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 335 IPR031066 GO:0005634(PANTHER)
Cmu01g1643 400 MobiDBLite consensus disorder prediction 98 114 - -
Cmu01g1643 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983(InterPro)
Cmu01g1643 400 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Cmu01g1643 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Cmu01g1643 400 FunFam Basic helix-loop-helix transcription factor 167 230 - -
Cmu01g1643 400 Gene3D - 167 231 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1643 Cmu-Chr1:30130075 Cmu08g1543 Cmu-Chr8:27280507 7.70E-40 dispersed
Cmu04g1235 Cmu-Chr4:26858267 Cmu01g1643 Cmu-Chr1:30130075 2.80E-19 transposed
Cmu07g0213 Cmu-Chr7:2102388 Cmu01g1643 Cmu-Chr1:30130075 5.40E-23 transposed
Cmu09g0899 Cmu-Chr9:8832879 Cmu01g1643 Cmu-Chr1:30130075 1.60E-24 transposed
Cmu11g1657 Cmu-Chr11:28819993 Cmu01g1643 Cmu-Chr1:30130075 1.90E-22 transposed
Cmu06g0290 Cmu-Chr6:3376185 Cmu01g1643 Cmu-Chr1:30130075 4.60E-18 transposed
Cmu01g1643 Cmu-Chr1:30130075 Cmu05g2059 Cmu-Chr5:30274809 3.30E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5545 PF00010 HLH 4.70E-14 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1643 - - - 0.0