Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu01g1645 | ATGTGGGATCTGAACGATTGGCCTGATGCGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGTCGTTGGGAGTCGCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGACACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA | 1488 | 48.45 | MWDLNDWPDAREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRTQTAVGAADQPNSQILLHNHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS | 495 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 30163280 | 30165791 | - | CmPI595203_01g016450.1 | Cmu01g1645 | 407151 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu01g1645 | 495 | Gene3D | AP2/ERF domain | 225 | 284 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | Gene3D | AP2/ERF domain | 133 | 192 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | FunFam | AP2-like ethylene-responsive transcription factor | 133 | 192 | - | - | |
| Cmu01g1645 | 495 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 40 | 355 | - | - | |
| Cmu01g1645 | 495 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Cmu01g1645 | 495 | MobiDBLite | consensus disorder prediction | 105 | 134 | - | - | |
| Cmu01g1645 | 495 | FunFam | AP2-like ethylene-responsive transcription factor | 225 | 285 | - | - | |
| Cmu01g1645 | 495 | CDD | AP2 | 134 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | SUPERFAMILY | DNA-binding domain | 133 | 191 | IPR016177 | GO:0003677(InterPro) | |
| Cmu01g1645 | 495 | CDD | AP2 | 225 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | SMART | rav1_2 | 134 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | SMART | rav1_2 | 226 | 289 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | MobiDBLite | consensus disorder prediction | 290 | 335 | - | - | |
| Cmu01g1645 | 495 | PRINTS | Ethylene responsive element binding protein signature | 227 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | PRINTS | Ethylene responsive element binding protein signature | 265 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | ProSiteProfiles | AP2/ERF domain profile. | 226 | 283 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | ProSiteProfiles | AP2/ERF domain profile. | 134 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
| Cmu01g1645 | 495 | SUPERFAMILY | DNA-binding domain | 225 | 285 | IPR016177 | GO:0003677(InterPro) | |
| Cmu01g1645 | 495 | Pfam | AP2 domain | 225 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | Pfam | AP2 domain | 134 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu01g1645 | 495 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu01g1645 | Cmu-Chr1:30163280 | Cmu02g2070 | Cmu-Chr2:34359105 | 2.60E-90 | dispersed | |
| Cmu01g1645 | Cmu-Chr1:30163280 | Cmu02g1227 | Cmu-Chr2:25101785 | 1.20E-130 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5546 | PF00847 | AP2 | 3.40E-10 | CL0081 | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu01g1645 | K09284 | - | csv:101214724 | 763.066 |