Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1646 ATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCACACGCATCGGCGTCTCCGCCGGAGACAAAAGGCTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 522 54.98 MDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30187534 30188055 - CmPI595203_01g016460.1 Cmu01g1646 407152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1646 173 CDD AP2 19 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1646 173 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1646 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 160 - -
Cmu01g1646 173 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Cmu01g1646 173 MobiDBLite consensus disorder prediction 114 173 - -
Cmu01g1646 173 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1646 173 SMART rav1_2 18 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1646 173 Pfam AP2 domain 19 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1646 173 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677(InterPro)
Cmu01g1646 173 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1646 173 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1646 Cmu-Chr1:30187534 Cmu08g0109 Cmu-Chr8:2170118 2.90E-20 dispersed
Cmu01g1646 Cmu-Chr1:30187534 Cmu02g1224 Cmu-Chr2:25067069 8.80E-41 wgd
Cmu01g1646 Cmu-Chr1:30187534 Cmu05g2073 Cmu-Chr5:30376286 1.70E-39 wgd
Cmu01g1646 Cmu-Chr1:30187534 Cmu08g1548 Cmu-Chr8:27318969 2.10E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5547 PF00847 AP2 2.30E-11 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1646 K09286 - csv:101214481 292.737