Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1650 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTTACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGGGAAACCACCTCTTTCTACTTCTTCCCTCAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTCTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG 894 53.02 MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSLPETSSLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30234149 30235257 - CmPI595203_01g016500.1 Cmu01g1650 407156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1650 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1650 297 MobiDBLite consensus disorder prediction 100 127 - -
Cmu01g1650 297 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1650 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 285 IPR044810 GO:0003700(InterPro)
Cmu01g1650 297 FunFam WRKY transcription factor 65 208 285 - -
Cmu01g1650 297 Gene3D WRKY domain 208 285 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1650 297 MobiDBLite consensus disorder prediction 162 186 - -
Cmu01g1650 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1650 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1650 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1650 Cmu-Chr1:30234149 Cmu05g2698 Cmu-Chr5:35481369 1.10E-54 dispersed
Cmu02g0815 Cmu-Chr2:9448224 Cmu01g1650 Cmu-Chr1:30234149 7.40E-85 transposed
Cmu01g1650 Cmu-Chr1:30234149 Cmu05g2081 Cmu-Chr5:30426329 1.60E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5548 PF03106 WRKY 3.80E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1650 - - - 0.0