Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1654 ATGCATACGTTCCTCGCTCCTAAAACCAATCTTGCAACAAACCCCGCAAATGATCAAGGAATTTGTAATAATCTCCAGTTCCCTCGTTTCCATTTTCGAACTGTGACCAGACACGACCTTCGCGGAGATCTTAACTGGACGCGCCATCTTCTTCGCTTCCTTTCCTTCCCAATCATTGGTTCCATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAATAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCCAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCCGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAGATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCGTTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAAGGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCACTCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCATCAACAACAATTGCCTCCGGAAGAATTGTGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCAAAAGAACCTGCCGTAATACAACCATCAGCCATTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 2076 40.99 MHTFLAPKTNLATNPANDQGICNNLQFPRFHFRTVTRHDLRGDLNWTRHLLRFLSFPIIGSMRSSPSFLFVADNKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTRSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSVTISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEEKDDDVFSDSDEENGDIKTSLAHSTSGTGNGTSKADHSSTTIASGRIVSLAHDTSCLTLGNEKNSQPNAPKEPAVIQPSAIEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30274497 30282440 + CmPI595203_01g016540.1 Cmu01g1654 407160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1654 691 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 233 400 IPR029021 -
Cmu01g1654 691 ProSiteProfiles Phosphatase tensin-type domain profile. 220 399 IPR029023 -
Cmu01g1654 691 ProSiteProfiles C2 tensin-type domain profile. 406 533 IPR014020 -
Cmu01g1654 691 MobiDBLite consensus disorder prediction 540 616 - -
Cmu01g1654 691 CDD PTP_PTEN 230 395 IPR045101 GO:0016791(InterPro)
Cmu01g1654 691 MobiDBLite consensus disorder prediction 129 148 - -
Cmu01g1654 691 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 207 611 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cmu01g1654 691 MobiDBLite consensus disorder prediction 595 616 - -
Cmu01g1654 691 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 205 402 - -
Cmu01g1654 691 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 298 354 - -
Cmu01g1654 691 Pfam PTEN2, C2 domain 406 534 - -
Cmu01g1654 691 MobiDBLite consensus disorder prediction 90 114 - -
Cmu01g1654 691 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 334 373 IPR000387 GO:0016311(InterPro)
Cmu01g1654 691 ProSitePatterns Tyrosine specific protein phosphatases active site. 336 346 IPR016130 GO:0016311(InterPro)
Cmu01g1654 691 SMART PTEN_C2_2 404 532 IPR014020 -
Cmu01g1654 691 MobiDBLite consensus disorder prediction 545 559 - -
Cmu01g1654 691 Gene3D Protein tyrosine phosphatase superfamily 205 402 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1654 K01110 - - csv:101213277 1100.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1654 Cmu-Chr1:30274497 Cmu02g0661 Cmu-Chr2:6551902 3.50E-205 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu09g0990 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.1e-122 435.3
Cmu06g1874 . 16 911 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Cmu06g0571 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cmu09g1989 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cmu05g2202 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.2e-116 414.1
Cmu07g0539 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.5e-98 354.0
Cmu10g2178 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 73.1 7.2e-204 706.8
Cmu02g1800 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cmu09g1064 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cmu10g1085 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.0e-101 365.5
Cmu11g0192 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cmu11g0192 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cmu10g1085 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cmu02g1800 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cmu09g1064 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.1e-70 260.8
Cmu03g1637 . 13 181 Protein tyrosine phosphatase (PTP) family AT4G03960 58.6 5.0e-56 214.5
Cmu03g1637 . 7 188 Protein tyrosine phosphatase (PTP) family AT3G02800 69.2 3.7e-70 261.5
Cmu02g1800 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cmu07g0350 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.5e-63 239.2
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu02g0661 . 560 1164 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 2.6e-220 761.9
Cmu01g1654 . 116 691 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.6e-200 694.1
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu02g2183 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.1e-69 258.8
Cmu10g1027 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Cmu04g0770 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Cmu04g0770 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cmu04g0770 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83