Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1654 ATGCATACGTTCCTCGCTCCTAAAACCAATCTTGCAACAAACCCCGCAAATGATCAAGGAATTTGTAATAATCTCCAGTTCCCTCGTTTCCATTTTCGAACTGTGACCAGACACGACCTTCGCGGAGATCTTAACTGGACGCGCCATCTTCTTCGCTTCCTTTCCTTCCCAATCATTGGTTCCATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAATAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCCAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCCGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAGATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCGTTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAAGGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCACTCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCATCAACAACAATTGCCTCCGGAAGAATTGTGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCAAAAGAACCTGCCGTAATACAACCATCAGCCATTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 2076 40.99 MHTFLAPKTNLATNPANDQGICNNLQFPRFHFRTVTRHDLRGDLNWTRHLLRFLSFPIIGSMRSSPSFLFVADNKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTRSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSVTISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEEKDDDVFSDSDEENGDIKTSLAHSTSGTGNGTSKADHSSTTIASGRIVSLAHDTSCLTLGNEKNSQPNAPKEPAVIQPSAIEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30274497 30282440 + CmPI595203_01g016540.1 Cmu01g1654 407160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1654 691 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 233 400 IPR029021 -
Cmu01g1654 691 ProSiteProfiles Phosphatase tensin-type domain profile. 220 399 IPR029023 -
Cmu01g1654 691 ProSiteProfiles C2 tensin-type domain profile. 406 533 IPR014020 -
Cmu01g1654 691 MobiDBLite consensus disorder prediction 540 616 - -
Cmu01g1654 691 CDD PTP_PTEN 230 395 IPR045101 GO:0016791(InterPro)
Cmu01g1654 691 MobiDBLite consensus disorder prediction 129 148 - -
Cmu01g1654 691 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 207 611 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cmu01g1654 691 MobiDBLite consensus disorder prediction 595 616 - -
Cmu01g1654 691 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 205 402 - -
Cmu01g1654 691 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 298 354 - -
Cmu01g1654 691 Pfam PTEN2, C2 domain 406 534 - -
Cmu01g1654 691 MobiDBLite consensus disorder prediction 90 114 - -
Cmu01g1654 691 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 334 373 IPR000387 GO:0016311(InterPro)
Cmu01g1654 691 ProSitePatterns Tyrosine specific protein phosphatases active site. 336 346 IPR016130 GO:0016311(InterPro)
Cmu01g1654 691 SMART PTEN_C2_2 404 532 IPR014020 -
Cmu01g1654 691 MobiDBLite consensus disorder prediction 545 559 - -
Cmu01g1654 691 Gene3D Protein tyrosine phosphatase superfamily 205 402 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1654 Cmu-Chr1:30274497 Cmu02g0661 Cmu-Chr2:6551902 3.50E-205 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1654 K01110 - csv:101213277 1100.89