Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1727 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCTCATCTCAGTTTAACTACGGCATTTGCTATGGTGTTGATGCAGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTACAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGACTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTAGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCATTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1890 45.45 MNNVNGNNCNWLGFSVSPNVNMELSSSSATTVSPSIPANLFHSSSQFNYGICYGVDAEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMTENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNSNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30967935 30971063 + CmPI595203_01g017270.1 Cmu01g1727 407233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1727 629 Gene3D AP2/ERF domain 395 455 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 Gene3D AP2/ERF domain 292 361 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 ProSiteProfiles AP2/ERF domain profile. 395 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 Coils Coil 360 380 - -
Cmu01g1727 629 MobiDBLite consensus disorder prediction 489 512 - -
Cmu01g1727 629 FunFam AP2-like ethylene-responsive transcription factor 394 455 - -
Cmu01g1727 629 Pfam AP2 domain 293 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 Pfam AP2 domain 396 446 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 PRINTS Ethylene responsive element binding protein signature 294 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 PRINTS Ethylene responsive element binding protein signature 435 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 MobiDBLite consensus disorder prediction 474 512 - -
Cmu01g1727 629 FunFam AP2-like ethylene-responsive transcription factor ANT 292 361 - -
Cmu01g1727 629 SMART rav1_2 293 365 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 SMART rav1_2 395 459 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 CDD AP2 292 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 CDD AP2 394 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 SUPERFAMILY DNA-binding domain 292 361 IPR016177 GO:0003677(InterPro)
Cmu01g1727 629 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 220 521 - -
Cmu01g1727 629 ProSiteProfiles AP2/ERF domain profile. 293 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1727 629 SUPERFAMILY DNA-binding domain 394 454 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1727 Cmu-Chr1:30967935 Cmu05g2703 Cmu-Chr5:35529319 7.20E-133 dispersed
Cmu02g2315 Cmu-Chr2:36697922 Cmu01g1727 Cmu-Chr1:30967935 4.90E-91 transposed
Cmu06g1405 Cmu-Chr6:25215087 Cmu01g1727 Cmu-Chr1:30967935 4.60E-95 transposed
Cmu10g1578 Cmu-Chr10:12056366 Cmu01g1727 Cmu-Chr1:30967935 5.30E-86 transposed
Cmu01g1727 Cmu-Chr1:30967935 Cmu08g1610 Cmu-Chr8:27776424 3.00E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5559 PF00847 AP2 1.20E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1727 K09285 - csv:101203323 1157.51