Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1736 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTAAATCTTCCCTCTAATCCTCCCCATCTTTCTCAAAAACCCAAGAAGCCCCTGGATTTGCTCTGTTTTCCCCCCCCTGAATCCGAGCCTTCCTTAACTTTGGGGCTTTCCACCGTCGACACTTACCCATCTGAAACCGCTGATTTGTCACGGCAACCATCTCCTCACAGTGCGATTTCTTCTTTCTCTGGCGGTAAGGTCAAGCGTGAAAGAGATGTTTCCGGTGGTGAAGATATTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGCGACGAAGAAGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAAGAGAGCTTCAAACTTCACAGTACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCTAGAGAGTTAAATCTCCTGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTGCAGAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCTCTATTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGCGAGCGGATCGGCGGTGGTGCCGCCACCGTTAACGGCGACGGCAATTCCAAGGGCCCATTTTCGATGGCCCCCAACCCCCGGTTTTACAAAGCCTTCACCAAGCCCTCCGCTGCTTGCTAA 795 48.55 MGFDDLSNTGLLLGLGLNLPSNPPHLSQKPKKPLDLLCFPPPESEPSLTLGLSTVDTYPSETADLSRQPSPHSAISSFSGGKVKRERDVSGGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNSKGPFSMAPNPRFYKAFTKPSAAC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31093573 31094565 + CmPI595203_01g017360.1 Cmu01g1736 407242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1736 264 SMART halz 171 214 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1736 264 MobiDBLite consensus disorder prediction 81 118 - -
Cmu01g1736 264 FunFam Homeobox-leucine zipper protein 18 100 176 - -
Cmu01g1736 264 MobiDBLite consensus disorder prediction 12 118 - -
Cmu01g1736 264 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677(InterPro)
Cmu01g1736 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 239 IPR050762 -
Cmu01g1736 264 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Cmu01g1736 264 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1736 264 CDD homeodomain 115 172 IPR001356 GO:0003677(InterPro)
Cmu01g1736 264 MobiDBLite consensus disorder prediction 47 77 - -
Cmu01g1736 264 Coils Coil 177 207 - -
Cmu01g1736 264 Gene3D - 107 176 - -
Cmu01g1736 264 SMART HOX_1 113 175 IPR001356 GO:0003677(InterPro)
Cmu01g1736 264 Pfam Homeodomain 115 169 IPR001356 GO:0003677(InterPro)
Cmu01g1736 264 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1736 Cmu-Chr1:31093573 Cmu10g1637 Cmu-Chr10:16923987 7.50E-76 dispersed
Cmu01g1736 Cmu-Chr1:31093573 Cmu09g0364 Cmu-Chr9:3512101 1.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5561 PF00046 Homeodomain 1.00E-15 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1736 K09338 - csv:101218782 465.307