Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1745 ATGTGGTTTCTTCTTGTTTTTGTGCTTCTTCAACTTCACTTTTCCCCTTCCTTCTCTGCCTTCCTACCCGAATCCCAAGCCCTTCTCTCTCTCAAATCCTCCATTTCTTACGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGTCGCCGCCCACTGTACCTGGTTCGGCGTCACATGCGACGCCCGCCGCCACGTCATTGCCCTCCACCTCTCTTCCCTTGACCTCGCCGGCACCATTTCCCCTGACCTTGCGTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCATTTCTTCTCTCCAGTATCTTAATCTCTCTAGTAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTCAAAAACTTACAGGTTCTTGATGTTTATAACAATAACCTGACCGGTGATTTTCCCAGAGTGGTCACTGAAATGACCAACCTCCGCCATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAGGTCGGACGGTTGCAGTTCTTGGAGTTTTTGGCGATTCACGGCAATGACCTTGAAGGTCCAATACCGCCGGCGATCGGAAACTTGACGAAGCTTCGGGAACTTTACATTGGTTACTACAACATCTTCGTCGGTGGAATACCGTCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGACCGGAAAGTTTCCGCCGGAGCTGGGAAAGTTGCAGAAACTCACTGAACTGTACCTTCAACAAAATGCTCTGTCTGGACCTTTGCTGGAGCTAGGAGGATTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGAGGCTGTTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGGCGACCTCCCAAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACAGGTTCGATCCCTCGAAATTTGGGGAAGAACGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCACTTGACAGGTACGATTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAATTCCTTGTCTGGTTCCATCCCAGAATCATTGGGGAATTGTATTTCACTTAAGCGTATACTTCTGTGGGGAAACGCTCTTAATGGATCAATTCCAAAGAGGCTTTTGAGTTTGCCAAATCTCACTCAAGTTGATTTGCAAGACAATTTTCTCTCCGGAGAATTTCCCATTACCAATTCAGTCTCGGTCAACCTTCTTCAGATAAGTTTATCTAATAATATGCTCTCTGGATCCTTGCCACCCACCATCGGCAGCCTTGTGGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCTGGTCAGATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAGTTCTCTGGTACAATTGTGCCAGAGATAAGTGAGTGTAAACACTTAATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATCCCCGACCATATTACCAACATGAAGTTATTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCCATTCCTGCTTCAATAGTTAACATGCAGAGCTTAACCTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGACAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGTGCATATTTGGGGCCTTGCAAAGATGGGGTTCTTGCTAGCAATCACCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGTTTTTTTTTTGGTTTAGTTGCACTCACAGTTGCATTGATCTCCAAAGTTCGGTGGTTTAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTGGGTTTCTCGGTTGATGAGATCTTGGATTGCCTTAAGAAGGAAAATCTTATTGCAAAAGGAGGTTATGGCACAGTATATACAGGAGTGATGCCTAGTGGTGATCAGATCACTCTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTCGTGACCACGGATTCAATGCCGAGATTCAAGCTCTTGGGAGGATTCGACACCGACACATTGTTAGATTATTGGGCCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGTCTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTTTGGGATACGAGGTACAAGATAGCCATTGGAACTGCGAATGGACTCTGCTATCTTCACCACCATTGCTCGCCGCCCATTGTTCATCGAAATGTGAAATCAAACAACATTATGCTAGACACCAACTTTGAAGCTCAAATTGCCAATTCCGGGCTTGCAAAGTTCTTAGAAGATTCAAGGACATCGGATAAGTCAGCTACCGAGCCAGAGCATGCCGACACACAGAATGCCGATGAGAAGTGGGATGTATATAGCTTCGGTATCATCCTATTGGAACTCGTTAGCGGTAGGAATCCAGTCGGAGAACTAAGCGACAGTGTCGACATAGTTCAATGGGTTAGAAACATGTCAGTTTCAGAAAAGGAAGAAATACATAAAATCGTCGATCAAAGACTCTCCTCCGTCCCCCTTGACGAAGTGATGCACGTGCTCAATGTTGCCATGCTGTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACGATGCGGGAAGTCGTCCGGATCTTAACTGAGCATCAGCAACAATCATTCTCGAAGGAGAATGAAGATACATAA 2898 45.65 MWFLLVFVLLQLHFSPSFSAFLPESQALLSLKSSISYDPRSSLSSWNAVAAHCTWFGVTCDARRHVIALHLSSLDLAGTISPDLASLRFLTNVSFGLNKFSGGIPPEIASISSLQYLNLSSNVLNGSIPREFSQLKNLQVLDVYNNNLTGDFPRVVTEMTNLRHLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPPAIGNLTKLRELYIGYYNIFVGGIPSTIGNLSELVRLDAASCGLTGKFPPELGKLQKLTELYLQQNALSGPLLELGGLKSIEELDISCNMLVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFMGDLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEICHGNKLEVLIAMGNSLSGSIPESLGNCISLKRILLWGNALNGSIPKRLLSLPNLTQVDLQDNFLSGEFPITNSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSNIGRLQQLSRINFSQNKFSGTIVPEISECKHLIFLDLSGNELSGEIPDHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVLASNHQEHMKGSLSTPLRLLLVFGFFFGLVALTVALISKVRWFKRARESRGWRLTAFQRLGFSVDEILDCLKKENLIAKGGYGTVYTGVMPSGDQITLKRLPKMSNGCSRDHGFNAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRNVKSNNIMLDTNFEAQIANSGLAKFLEDSRTSDKSATEPEHADTQNADEKWDVYSFGIILLELVSGRNPVGELSDSVDIVQWVRNMSVSEKEEIHKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSFSKENEDT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31153033 31156155 - CmPI595203_01g017450.1 Cmu01g1745 407251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1745 965 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 Pfam Leucine Rich Repeat 354 374 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 Pfam Leucine Rich Repeat 281 301 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 Pfam Leucine Rich Repeat 329 350 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 Pfam Leucine Rich Repeat 377 399 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 Gene3D Ribonuclease Inhibitor 342 615 IPR032675 -
Cmu01g1745 965 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 765 958 - -
Cmu01g1745 965 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Cmu01g1745 965 SMART LRR_sd22_2 135 164 - -
Cmu01g1745 965 SMART LRR_sd22_2 256 287 - -
Cmu01g1745 965 SMART LRR_sd22_2 207 234 - -
Cmu01g1745 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 22 177 - -
Cmu01g1745 965 Gene3D Ribonuclease Inhibitor 177 274 IPR032675 -
Cmu01g1745 965 Gene3D Ribonuclease Inhibitor 23 176 IPR032675 -
Cmu01g1745 965 SMART LRR_typ_2 111 135 IPR003591 -
Cmu01g1745 965 SMART LRR_typ_2 471 495 IPR003591 -
Cmu01g1745 965 SMART LRR_typ_2 352 375 IPR003591 -
Cmu01g1745 965 SMART LRR_typ_2 256 279 IPR003591 -
Cmu01g1745 965 SMART LRR_typ_2 567 590 IPR003591 -
Cmu01g1745 965 SMART LRR_typ_2 327 351 IPR003591 -
Cmu01g1745 965 SMART LRR_typ_2 159 183 IPR003591 -
Cmu01g1745 965 Gene3D Ribonuclease Inhibitor 275 341 IPR032675 -
Cmu01g1745 965 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 165 272 - -
Cmu01g1745 965 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515(InterPro)
Cmu01g1745 965 SUPERFAMILY RNI-like 69 413 - -
Cmu01g1745 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Cmu01g1745 965 SUPERFAMILY L domain-like 353 611 - -
Cmu01g1745 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Cmu01g1745 965 Gene3D Phosphorylase Kinase; domain 1 658 764 - -
Cmu01g1745 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 273 - -
Cmu01g1745 965 Pfam Protein tyrosine and serine/threonine kinase 688 950 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1745 965 SUPERFAMILY Protein kinase-like (PK-like) 681 950 IPR011009 -
Cmu01g1745 965 ProSiteProfiles Protein kinase domain profile. 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1745 965 Gene3D Transferase(Phosphotransferase) domain 1 765 965 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1745 Cmu-Chr1:31153033 Cmu10g1617 Cmu-Chr10:14382863 9.30E-23 dispersed
Cmu01g1745 Cmu-Chr1:31153033 Cmu01g1746 Cmu-Chr1:31168545 9.90E-25 tandem
Cmu01g2540 Cmu-Chr1:37229873 Cmu01g1745 Cmu-Chr1:31153033 1.20E-91 transposed
Cmu05g1860 Cmu-Chr5:28624357 Cmu01g1745 Cmu-Chr1:31153033 2.80E-96 transposed
Cmu10g1507 Cmu-Chr10:10189928 Cmu01g1745 Cmu-Chr1:31153033 2.90E-96 transposed
Cmu01g1745 Cmu-Chr1:31153033 Cmu11g1490 Cmu-Chr11:27233589 2.80E-59 wgd
Cmu01g1745 Cmu-Chr1:31153033 Cmu08g1136 Cmu-Chr8:23746096 7.00E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75229 PF07714 PK_Tyr_Ser-Thr 5.90E-37 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1745 - - - 0.0