Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1763 ATGGAGCTCAGTCAACATGGTTTTTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGCAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCTCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGTTTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGACCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGAAGTTGAAAGGACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1026 41.52 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGCNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETSPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMDQMGLRETNGSKMGVAELGKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31347739 31349064 - CmPI595203_01g017630.1 Cmu01g1763 407269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1763 341 SMART finulus 172 221 IPR011598 GO:0046983(InterPro)
Cmu01g1763 341 Pfam Plant bHLH transcription factor, ACT-like domain 259 330 IPR054502 -
Cmu01g1763 341 Pfam Helix-loop-helix DNA-binding domain 173 215 IPR011598 GO:0046983(InterPro)
Cmu01g1763 341 Gene3D - 158 229 IPR036638 GO:0046983(InterPro)
Cmu01g1763 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983(InterPro)
Cmu01g1763 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983(InterPro)
Cmu01g1763 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 109 336 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1763 Cmu-Chr1:31347739 Cmu03g1002 Cmu-Chr3:4648530 1.70E-32 dispersed
Cmu02g0423 Cmu-Chr2:3851255 Cmu01g1763 Cmu-Chr1:31347739 2.20E-17 transposed
Cmu01g1763 Cmu-Chr1:31347739 Cmu11g1484 Cmu-Chr11:27146309 1.50E-68 wgd
Cmu01g1763 Cmu-Chr1:31347739 Cmu08g1128 Cmu-Chr8:23637418 3.50E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5566 PF00010 HLH 2.10E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1763 - - - 0.0