Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1768 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTGTTAAAAAGGCTAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCCAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATACAGTCAGTAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCAGATGTCAAGTTATGGCAGAAGGAAGTAACAACTCTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAGCTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTCAGCTTACAAAGCATCCGAATTAAAAAGGAACAAATATTAAATGATGAAATAAAAGAATTGAACCGAAAGGGAATTCTGATGCATCAAGAAAATATAGAGTTGAGCAATAAAGTAAACCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCGAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTGATTCCATATGGTATCATCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCCCTATTGCAAGCGACGCCCTGCGTGTACCAATCCATCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 723 41.77 MGRGKIVIRRIDNSASRQVTFSKRRKGLVKKAKELSILCDAEVGLIIFSSSGKHYEFASTSIQSVIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSNKVNLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAAAAAAAAVPIASDALRVPIHLQLSPPEQQA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31401104 31404101 - CmPI595203_01g017680.1 Cmu01g1768 407274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1768 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g1768 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 Coils Coil 123 143 - -
Cmu01g1768 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu01g1768 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g1768 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g1768 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1768 240 Coils Coil 86 113 - -
Cmu01g1768 240 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1768 Cmu-Chr1:31401104 Cmu01g2353 Cmu-Chr1:35604554 1.50E-35 dispersed
Cmu01g1768 Cmu-Chr1:31401104 Cmu10g1771 Cmu-Chr10:21909588 3.10E-28 wgd
Cmu01g1768 Cmu-Chr1:31401104 Cmu11g1474 Cmu-Chr11:27042685 2.20E-21 wgd
Cmu01g1768 Cmu-Chr1:31401104 Cmu08g1107 Cmu-Chr8:23400926 1.40E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5567 PF01486 K-box 1.10E-23 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1768 K09264 - csv:101206453 425.246