Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1769 ATGGAGAAGAAAGGCAAAAGAAGAAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGATGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAAATAGAGCTTTCCTTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGATGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAATGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCCGACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCGAGACAAGGCCCAACTTTGTGGGAGATTGGTATCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAGCCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGAATCGTTACTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGGTTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGAATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGCAGAAGATGAAAACATAATCTATCTTACACAAAGAAGACATACGGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA 2082 45.53 MEKKGKRRRQQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVTPRSSTSLNLLVYDPPRQGPTLWEIGIPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWNRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTEYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLAEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31414268 31418481 + CmPI595203_01g017690.1 Cmu01g1769 407275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1769 693 CDD RGL4_C 497 690 - -
Cmu01g1769 693 Gene3D - 493 689 - -
Cmu01g1769 693 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cmu01g1769 693 SUPERFAMILY Galactose mutarotase-like 68 353 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cmu01g1769 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 691 IPR051850 -
Cmu01g1769 693 SUPERFAMILY Galactose-binding domain-like 493 690 IPR008979 -
Cmu01g1769 693 CDD RGL4_N 64 348 - -
Cmu01g1769 693 CDD RGL4_M 386 483 IPR029413 -
Cmu01g1769 693 Pfam Polysaccharide lyase family 4, domain III 495 689 IPR029411 -
Cmu01g1769 693 Gene3D - 383 485 - -
Cmu01g1769 693 Gene3D - 64 353 IPR014718 GO:0030246(InterPro)
Cmu01g1769 693 Pfam Rhamnogalacturonate lyase family 66 254 IPR010325 -
Cmu01g1769 693 SUPERFAMILY Starch-binding domain-like 384 485 IPR013784 GO:0030246(InterPro)
Cmu01g1769 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1769 Cmu-Chr1:31414268 Cmu11g1472 Cmu-Chr11:27020344 1.70E-220 dispersed
Cmu10g1632 Cmu-Chr10:15683243 Cmu01g1769 Cmu-Chr1:31414268 3.40E-237 transposed
Cmu01g1769 Cmu-Chr1:31414268 Cmu11g1471 Cmu-Chr11:27000616 1.80E-198 wgd
Cmu01g1769 Cmu-Chr1:31414268 Cmu08g1092 Cmu-Chr8:23227398 5.30E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1769 K18195 - csv:101206696 1127.08