Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1782 ATGAAAGTGGAGAGCCCCGGTAGGAAAGCAAAAGCTGAGACGAACAGTACAAAGCCGCGCGTGTCGTTCTGTGGAGCGCGAAGATATACGGCCGTAGCCGTGACAGGGAATGGTCCACTCCTCCCTGACACGCTTTTGTGCTATTTCCCTCTCATCCTCAACCTTTTACGGCAAAGTTTGGCTGCCGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAGACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAGAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAAGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGAGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTCCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTTGTGTAGTTAAAGTGGAACGAGCAGAGGCAAAATCAAAACCAGATCAGTCTGATTTATGGGCTCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATTAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAGACGCTCTCATCAGTCGGCTGCGGTATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCACTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGACAAGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTTAACTCTCAGTTCACAGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAAATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTGACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCGGCTTCTCCTGGAAATATGCACAATGCAATGGTGGGACATCGCACGTATGAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAATAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA 2556 45.5 MKVESPGRKAKAETNSTKPRVSFCGARRYTAVAVTGNGPLLPDTLLCYFPLILNLLRQSLAAELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVKHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVRVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPCVVKVERAEAKSKPDQSDLWAPLADEGWRPCVASSKASWSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGDALISRLRYPLNKESKKANYLSMTTDANEQGPLKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARILTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYENLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQIRLRKPKQSIYTYPAPDCVCHS 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31510940 31529834 - CmPI595203_01g017820.1 Cmu01g1782 407288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1782 851 FunFam Transcription factor, MADS-box 128 198 - -
Cmu01g1782 851 ProSiteProfiles MADS-box domain profile. 116 176 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 Pfam K-box region 206 286 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g1782 851 CDD O-FucT_plant 439 794 IPR024709 -
Cmu01g1782 851 ProSiteProfiles K-box domain profile. 202 292 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g1782 851 Coils Coil 209 229 - -
Cmu01g1782 851 CDD MADS_MEF2_like 117 192 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu01g1782 851 Gene3D - 128 197 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 MobiDBLite consensus disorder prediction 307 333 - -
Cmu01g1782 851 SUPERFAMILY SRF-like 118 198 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 125 172 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 SMART madsneu2 116 175 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 Coils Coil 236 256 - -
Cmu01g1782 851 PRINTS MADS domain signature 138 153 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 PRINTS MADS domain signature 153 174 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 PRINTS MADS domain signature 118 138 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g1782 851 Coils Coil 258 292 - -
Cmu01g1782 851 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 333 850 IPR052272 -
Cmu01g1782 851 Pfam GDP-fucose protein O-fucosyltransferase 439 788 IPR019378 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1782 Cmu-Chr1:31510940 Cmu08g0050 Cmu-Chr8:1138463 1.70E-84 dispersed
Cmu09g1571 Cmu-Chr9:29746175 Cmu01g1782 Cmu-Chr1:31510940 5.30E-20 dispersed
Cmu10g1783 Cmu-Chr10:22151009 Cmu01g1782 Cmu-Chr1:31510940 1.50E-13 dispersed
Cmu11g1474 Cmu-Chr11:27042685 Cmu01g1782 Cmu-Chr1:31510940 6.80E-20 dispersed
Cmu01g0945 Cmu-Chr1:13132017 Cmu01g1782 Cmu-Chr1:31510940 5.90E-78 transposed
Cmu03g1350 Cmu-Chr3:8624251 Cmu01g1782 Cmu-Chr1:31510940 1.90E-80 transposed
Cmu05g2636 Cmu-Chr5:34991514 Cmu01g1782 Cmu-Chr1:31510940 5.80E-86 transposed
Cmu01g1782 Cmu-Chr1:31510940 Cmu10g1749 Cmu-Chr10:21565469 4.80E-47 wgd
Cmu01g1782 Cmu-Chr1:31510940 Cmu08g1107 Cmu-Chr8:23400926 2.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5569 PF10250 O-FucT 1.10E-62 CL0113 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1782 - - - 0.0