Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1791 ATGGCTGATAGTTTCTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1095 39.45 MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31602378 31604249 + CmPI595203_01g017910.1 Cmu01g1791 407297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1791 364 CDD CYCLIN_AtCycD-like_rpt1 94 191 - -
Cmu01g1791 364 Pfam Cyclin, N-terminal domain 65 193 IPR006671 -
Cmu01g1791 364 FunFam D2/4-type cyclin 77 189 - -
Cmu01g1791 364 PANTHER CYCLINS 61 282 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu01g1791 364 SMART Cyclin_C_2 196 307 IPR004367 -
Cmu01g1791 364 MobiDBLite consensus disorder prediction 328 364 - -
Cmu01g1791 364 Pfam Cyclin, C-terminal domain 196 287 IPR004367 -
Cmu01g1791 364 FunFam D6-type cyclin 190 281 - -
Cmu01g1791 364 CDD CYCLIN_AtCycD-like_rpt2 196 283 - -
Cmu01g1791 364 Gene3D - 65 282 - -
Cmu01g1791 364 SUPERFAMILY Cyclin-like 178 306 IPR036915 -
Cmu01g1791 364 SMART cyclin_7 99 187 IPR013763 -
Cmu01g1791 364 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Cmu01g1791 364 Gene3D - 77 194 - -
Cmu01g1791 364 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1791 Cmu-Chr1:31602378 Cmu08g1552 Cmu-Chr8:27353605 5.90E-47 dispersed
Cmu02g1147 Cmu-Chr2:23788362 Cmu01g1791 Cmu-Chr1:31602378 9.40E-33 transposed
Cmu04g0844 Cmu-Chr4:22952283 Cmu01g1791 Cmu-Chr1:31602378 2.40E-22 transposed
Cmu05g2116 Cmu-Chr5:30698109 Cmu01g1791 Cmu-Chr1:31602378 1.30E-31 transposed
Cmu10g1798 Cmu-Chr10:22379054 Cmu01g1791 Cmu-Chr1:31602378 9.50E-55 transposed
Cmu01g1791 Cmu-Chr1:31602378 Cmu08g1090 Cmu-Chr8:23201762 1.70E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1791 K18810 - csv:101209378 570.466