Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1793 ATGGAGATGGCGGCAGCGAGTTACGACTCCCTGCCCAACTCAGGTGGCCGACTCAAAATCCCGACTAGTACGGACCAAATGATTTCAAGTACTGGACAGAGGAAACCCAAATACAGAGAGTGTTTGAAAAATCACGCAGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTCGCCGCGGGTGCTGAAGGCACACTCGACGCTCTTAAATGCGCCGCTTGCAACTGCCACCGCAACTTCCACCGCAAGGAAACCGACAGCCTCAACCCGGCCGTAGGCGTCGGACTTGGAATCGGAGAGCCATTTCTATTGCCACACCCAGGGCAGTTTTCACCTTACTACCGGACTCCAGCTGGGTACCTCCACGTGGCGCCACACCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAGGAGCAGGAGGATATGTCGAATCCCAGCGGCGGAGGCGGTGGAGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGGACGAAGTTTACTCAAGAACAGAAGGACAGAATGCTGGGGCTGGCGGAGACACTGGGTTGGAGGATTCAAAAACACGATGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTGAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAA 702 55.41 MEMAAASYDSLPNSGGRLKIPTSTDQMISSTGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDSLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31618341 31619042 - CmPI595203_01g017930.1 Cmu01g1793 407299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1793 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Cmu01g1793 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 87 IPR006456 -
Cmu01g1793 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Cmu01g1793 233 MobiDBLite consensus disorder prediction 132 170 - -
Cmu01g1793 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 37 87 IPR006456 -
Cmu01g1793 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 229 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu01g1793 233 FunFam Zinc-finger homeodomain protein 2 163 231 - -
Cmu01g1793 233 Pfam ZF-HD protein dimerisation region 37 88 IPR006456 -
Cmu01g1793 233 Gene3D - 156 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1793 Cmu-Chr1:31618341 Cmu11g0008 Cmu-Chr11:481676 5.00E-47 dispersed
Cmu10g1661 Cmu-Chr10:18561392 Cmu01g1793 Cmu-Chr1:31618341 3.40E-41 transposed
Cmu01g1793 Cmu-Chr1:31618341 Cmu08g1086 Cmu-Chr8:23127870 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5571 PF04770 ZF-HD_dimer 9.20E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1793 - - - 0.0