Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1814 ATGAATCCTCCCACTTTTCCCATGGAATTTTCCGGCGACCCACTTCCGACGACTATCATCGGAAGCGGCGACCCAAGGATTCCGTTGCAAAACCTCTCCACCATCCGTTCTAGAATGGATGACGTCCAAATCTTCCTATCCGATAACATCGACAGAGAAGTTCGTATCACCAATCAGCAGATGGATGCCGTTTCTTCTGAAATCGCCACCGCAATCCAACAGATCATCATCAACGGCGCCGCTCTTCTAGCCTACGCCGAAGCCAAAACCCCAACTGCGCCGGATTTGACGGCCTCCACGACTCGAACTCAGCCGAATCCTGTAACACAGAAATCAATGGTGGAGCTGAAGGTCGAGGGCGTAGATGAGATTACGAGAACCGAATCTGAAGAATTTGACTCGGATTGGGAAATAGCGGAGCTGGATGCGATGGAATTGCTGGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGGGACGCGAATTTGCGGATGCATATGCGGGCCCATGGAAATCAATTCAAGACCCCAGAGGCGTTGGCCAAGCCGTTGGATGTTGTTGGTGCGGACCACAGGGCGAAGCGCACGCGATTCTCGTGCCCTTACGACGGCTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCACTGAAGTCGTTGATTTGCGTCAAGAACCACTTCAAGCGTAGTCACTGCCCTAAGATGTTCTCTTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTCCCCGACGACGCTTCTGCATCGGCGGCGACGTCGGAGATGGATGAAGATGGAGACAGTAATCAGATTTCGAAGGATGTTAATTTCCCAAACGCCTCGAATGGTTCGTCGGATGATGGATCTTTTGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAAGAGGTGCTGGGATTCCCCTACGATTTCGATTCGGAATCCGAGTGGAAATTTTGTGGTTTTTGA 1122 50.8 MNPPTFPMEFSGDPLPTTIIGSGDPRIPLQNLSTIRSRMDDVQIFLSDNIDREVRITNQQMDAVSSEIATAIQQIIINGAALLAYAEAKTPTAPDLTASTTRTQPNPVTQKSMVELKVEGVDEITRTESEEFDSDWEIAELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDASASAATSEMDEDGDSNQISKDVNFPNASNGSSDDGSFESFLDGFGSIENHCLQEVLGFPYDFDSESEWKFCGF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31813195 31814316 - CmPI595203_01g018140.1 Cmu01g1814 407320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1814 373 Pfam Zinc finger, C2H2 type 152 174 IPR013087 -
Cmu01g1814 373 Gene3D Classic Zinc Finger 227 297 - -
Cmu01g1814 373 FunFam Zinc finger 45-like 149 175 - -
Cmu01g1814 373 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 314 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cmu01g1814 373 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Cmu01g1814 373 SMART c2h2final6 202 235 IPR013087 -
Cmu01g1814 373 SMART c2h2final6 240 262 IPR013087 -
Cmu01g1814 373 SMART c2h2final6 152 174 IPR013087 -
Cmu01g1814 373 SMART c2h2final6 268 292 IPR013087 -
Cmu01g1814 373 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Cmu01g1814 373 Gene3D Classic Zinc Finger 152 175 - -
Cmu01g1814 373 MobiDBLite consensus disorder prediction 308 333 - -
Cmu01g1814 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Cmu01g1814 373 MobiDBLite consensus disorder prediction 299 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1814 Cmu-Chr1:31813195 Cmu09g0994 Cmu-Chr9:10037445 9.30E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5573 PF00096 zf-C2H2 0.00015 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1814 - - - 0.0