Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1833 ATGGCAGCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTACCTCAACCTCCTCCTCTTCTTCTCCTTCTCTATCATTGCCTTCTCCTTCTGTTTCTTCTCAGTCTAGACTAAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTTTTGAGCAATCAGGTCCAATCGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCTCAAATTCAACTACCCTCACCAACTATGTCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCCAGTCCCAATATCGTAACTTCCTTGCCCCTAAATCCTTCACCATGAAGCACATCGGCTCTCCACCTAAGTCCACTAAACTATACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCTGAAATCAGACTCCCTAAGAACCGAACTAGACTCTGGCTTGGGACTTTCGACACGGCCGAGGAGGCTGCTTTGGCCTATGACAAAGCTGCTTACAAGCTCCGCGGGGACTTTGCTAGGCTCAATTTCCCACATCTTAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCCAAACTGAAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGCAGCTCTGTTCTGTTGAGGATGAAAAACCAACGACCAATCCACTTCCATTCGAATCAAACTCAGTGGCTAACAATTTTTGGGAACCAGAATTGAAAAGCGAAGTGGAAACCTCATCTTCGTCTTCATCCTCATCTCCTTCACGGTCTGAAGATTATTCCACCGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGGGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTGAGTCAGCTGGCCGAATCAGAGTGTTAA 1059 45.42 MAAAIDIYSGISTPVYSSDPFSEELMKALQPFMKSATSTSSSSSPSLSLPSPSVSSQSRLSPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPSPTMSSFSSSSSSSSSSSSSSFQSQYRNFLAPKSFTMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLKAICQGLKQGKTEQLCSVEDEKPTTNPLPFESNSVANNFWEPELKSEVETSSSSSSSSPSRSEDYSTGSSPESSISFLDFSDSQWGEGVEAFCLEKYPSVEIDWAALSQLAESEC 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31976975 31978033 - CmPI595203_01g018330.1 Cmu01g1833 407339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1833 352 CDD AP2 159 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1833 352 SMART rav1_2 160 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1833 352 MobiDBLite consensus disorder prediction 283 311 - -
Cmu01g1833 352 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1833 352 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677(InterPro)
Cmu01g1833 352 MobiDBLite consensus disorder prediction 34 62 - -
Cmu01g1833 352 Pfam AP2 domain 160 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1833 352 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 345 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu01g1833 352 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1833 352 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Cmu01g1833 352 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1833 352 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1833 Cmu-Chr1:31976975 Cmu11g1539 Cmu-Chr11:27710984 5.90E-60 dispersed
Cmu01g1833 Cmu-Chr1:31976975 Cmu08g1161 Cmu-Chr8:24030935 2.50E-16 wgd
Cmu01g1833 Cmu-Chr1:31976975 Cmu08g1036 Cmu-Chr8:22680774 1.20E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5576 PF00847 AP2 8.00E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1833 K09286 - csv:101211347 538.11