Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1868 ATGGCGGCCATGAATCTCCGACCCGACGGCGACAATTCACAACTCATTTCCCATCTCTACAACCCTGAAATTTACACCCAAATGTTACCCCAACAAGGTACGGCGGAGGGGAATAAGCCGCCGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGGGGCGGAGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATAAATTTTGGCAACGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTCCAAAATTCCCATCTTGAATCTGAGTTGGTGAAAGTGAAGGAGCAATTGAAAGAAGCAAAAAATGAAATAAAAAAATTGGGAGAAGGAAGCGAGAGAATTTCAAGCAATAACAGTCCGAGCTCTTCGGTAACAATGGAAGCAGTGGAAGCAGTGCCTTTGGGAGAGCTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGAATGGACTGGCTTAATCTTAATTATATGTAG 663 46.0 MAAMNLRPDGDNSQLISHLYNPEIYTQMLPQQGTAEGNKPPKRRRRRSKAKEGGGAGAAGLKKRKLSSEQVKLLEINFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQNSHLESELVKVKEQLKEAKNEIKKLGEGSERISSNNSPSSSVTMEAVEAVPLGELFLEEYEDVFYCMQDNNYNQGMDWLNLNYM 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32269744 32271731 + CmPI595203_01g018680.1 Cmu01g1868 407374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1868 220 CDD homeodomain 64 118 IPR001356 GO:0003677(InterPro)
Cmu01g1868 220 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Cmu01g1868 220 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
Cmu01g1868 220 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Cmu01g1868 220 MobiDBLite consensus disorder prediction 27 64 - -
Cmu01g1868 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 173 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cmu01g1868 220 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Cmu01g1868 220 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Cmu01g1868 220 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu01g1868 220 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
Cmu01g1868 220 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Cmu01g1868 220 Coils Coil 109 171 - -
Cmu01g1868 220 Gene3D - 58 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1868 Cmu-Chr1:32269744 Cmu07g0899 Cmu-Chr7:22791708 5.00E-41 dispersed
Cmu01g1868 Cmu-Chr1:32269744 Cmu10g2673 Cmu-Chr10:33529430 1.30E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5578 PF00046 Homeodomain 2.60E-16 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1868 K09338 - csv:101216890 341.658