Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1869 ATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCAATGCTTTCATTCCGTTCATTGGGGATGATGATTCTGATGATTTGGGTCCCGAGTTCGTCTTCAACATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGTTCCATTGTTTATGAAGGACTGTACGATTGTCAGCCTGTTGCCGTGAAGATCATACAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGACCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTCACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTCCTTCTTAGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCCCGCCCGCCGCCGCCGCCTCCCGACAACCGGCACACTCGCCCTCACACACGAAGTTACTAGGTTTTGTTCTGCGGGAAGTTTGTGGTTTATTTTCTGAGCCGCAGAGATTGGATTTGGATTTCGAGAGGTCCAGAATCCACAATTCTCAACCGTTGATCTTCCAGTCAACAACCTACATACAGACACGCCATCCACCTGGACTTCCACATCATTCCTCTCAAAGCTTCTTGCGCCATGAAAGCAGGTTGGTCGTAGAAATCATCAGGACACAGGACTGCAGCTCGAAAATCGTTGAATTATAG 1518 46.11 MADHSDEQHSFRTIANAFIPFIGDDDSDDLGPEFVFNIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDCQPVAVKIIQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESSLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVFLLSWQRRFHWWRHPLLPPYSASLPPPAAAASRQPAHSPSHTKLLGFVLREVCGLFSEPQRLDLDFERSRIHNSQPLIFQSTTYIQTRHPPGLPHHSSQSFLRHESRLVVEIIRTQDCSSKIVEL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32275019 32284188 + CmPI595203_01g018690.1 Cmu01g1869 407375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1869 505 MobiDBLite consensus disorder prediction 322 355 - -
Cmu01g1869 505 SUPERFAMILY Protein kinase-like (PK-like) 42 319 IPR011009 -
Cmu01g1869 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 Gene3D Phosphorylase Kinase; domain 1 38 129 - -
Cmu01g1869 505 SMART serkin_6 49 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 Gene3D Transferase(Phosphotransferase) domain 1 130 353 - -
Cmu01g1869 505 PANTHER SERINE-THREONINE PROTEIN KINASE 43 308 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu01g1869 505 ProSiteProfiles Protein kinase domain profile. 49 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g1869 505 CDD STKc_MAP3K-like 55 307 - -
Cmu01g1869 505 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1869 Cmu-Chr1:32275019 Cmu10g2140 Cmu-Chr10:27410753 1.80E-81 dispersed
Cmu01g1869 Cmu-Chr1:32275019 Cmu06g1786 Cmu-Chr6:28879435 2.20E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75234 PF07714 PK_Tyr_Ser-Thr 7.30E-54 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1869 - - - 0.0