Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1870 ATGGGGACTGGGGAAGAGGGCACACCTTCTAAAACTTCCAAACCTCCCTCGTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGCGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACACGATTTTGCGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA 1104 49.18 MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32284212 32287199 + CmPI595203_01g018700.1 Cmu01g1870 407376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1870 367 Coils Coil 280 335 - -
Cmu01g1870 367 Gene3D - 270 326 - -
Cmu01g1870 367 FunFam BZIP transcription factor 269 320 - -
Cmu01g1870 367 MobiDBLite consensus disorder prediction 264 290 - -
Cmu01g1870 367 SUPERFAMILY Leucine zipper domain 270 326 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1870 367 MobiDBLite consensus disorder prediction 105 171 - -
Cmu01g1870 367 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Cmu01g1870 367 PANTHER G-BOX-BINDING FACTOR 3-RELATED 16 355 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cmu01g1870 367 CDD bZIP_plant_GBF1 272 322 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1870 367 MobiDBLite consensus disorder prediction 1 29 - -
Cmu01g1870 367 MobiDBLite consensus disorder prediction 345 367 - -
Cmu01g1870 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 269 332 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1870 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1870 367 MobiDBLite consensus disorder prediction 189 220 - -
Cmu01g1870 367 SMART brlzneu 267 331 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1870 367 Pfam bZIP transcription factor 267 329 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g1870 367 MobiDBLite consensus disorder prediction 123 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1870 Cmu-Chr1:32284212 Cmu09g1108 Cmu-Chr9:11323078 7.10E-32 dispersed
Cmu01g1870 Cmu-Chr1:32284212 Cmu10g0976 Cmu-Chr10:1687103 2.40E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5579 PF07777 MFMR 3.70E-33 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1870 K09060 - csv:101217128 687.567