Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1872 ATGCCAACTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAATCTGATTGGAAAGCCCATTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAGCCTAAGCCAGTGGATTCTCAGCCTAAACCGGATTTAGACGCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATCGAAGAGGCGCTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGTGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGTCGACAGGCATTCAACCTCCAAGACCTCCCGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCACCGCCTGCAATGTCTGCCACAGCATTACTTCAAAAAGCAGCTCAAATGGGCGCGGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCACAGCAAGAAAGCTTGCCATGGAACCACCACCACCAAAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGGGTAGACGTCGGCATAACAACCCGATCATACGGCGGTGGTGACATATCCGGCGATGACATGAACAGAAGCAACTGA 1536 50.33 MPTDVKDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSQPKPDLDANPDGDSQSAAVKPNPEPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCIEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMSTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPPPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32295810 32297936 - CmPI595203_01g018720.1 Cmu01g1872 407378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1872 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cmu01g1872 511 MobiDBLite consensus disorder prediction 185 244 - -
Cmu01g1872 511 MobiDBLite consensus disorder prediction 218 238 - -
Cmu01g1872 511 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cmu01g1872 511 MobiDBLite consensus disorder prediction 1 39 - -
Cmu01g1872 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cmu01g1872 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cmu01g1872 511 FunFam protein indeterminate-domain 12-like 35 103 - -
Cmu01g1872 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 196 - -
Cmu01g1872 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cmu01g1872 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu01g1872 511 SMART c2h2final6 132 152 IPR013087 -
Cmu01g1872 511 SMART c2h2final6 97 127 IPR013087 -
Cmu01g1872 511 SMART c2h2final6 56 78 IPR013087 -
Cmu01g1872 511 MobiDBLite consensus disorder prediction 264 289 - -
Cmu01g1872 511 Gene3D Classic Zinc Finger 36 103 - -
Cmu01g1872 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cmu01g1872 511 MobiDBLite consensus disorder prediction 1 25 - -
Cmu01g1872 511 MobiDBLite consensus disorder prediction 269 289 - -
Cmu01g1872 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cmu01g1872 511 Gene3D Classic Zinc Finger 110 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1872 Cmu-Chr1:32295810 Cmu09g0066 Cmu-Chr9:880309 9.70E-88 dispersed
Cmu01g0658 Cmu-Chr1:7441831 Cmu01g1872 Cmu-Chr1:32295810 4.50E-61 transposed
Cmu02g1033 Cmu-Chr2:18154500 Cmu01g1872 Cmu-Chr1:32295810 1.80E-87 transposed
Cmu03g0847 Cmu-Chr3:2887259 Cmu01g1872 Cmu-Chr1:32295810 5.20E-87 transposed
Cmu04g1315 Cmu-Chr4:27452547 Cmu01g1872 Cmu-Chr1:32295810 2.90E-59 transposed
Cmu09g0705 Cmu-Chr9:6571100 Cmu01g1872 Cmu-Chr1:32295810 3.30E-88 transposed
Cmu01g1872 Cmu-Chr1:32295810 Cmu07g0903 Cmu-Chr7:22952426 1.80E-129 wgd
Cmu01g1872 Cmu-Chr1:32295810 Cmu08g1461 Cmu-Chr8:26654586 1.90E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5580 PF00096 zf-C2H2 0.0052 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1872 K25869 - csv:101217597 695.271