Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1880 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACGAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTTACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGTTGGTCTCGTGGACGGGGATTCCTCCGGCGACTCCTTCGGTGGTGGTTAAGGACACTCAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACTGAATCGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTATTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCATATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTTAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCAGTAAATCTCAGCCATTATGCAAAAAGCCAAGCTAAAATCCTTTTATGGAACTACGATTACAGCTCCGAGTATTCATTAATGGAATCCTCTGGGTTTCTCTCGTTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1803 49.47 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSDHNRIIFPDPPKSEPAVEPPLVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAYYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESVNLSHYAKSQAKILLWNYDYSSEYSLMESSGFLSLAWNEVPIITVSSWR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32360723 32362525 + CmPI595203_01g018800.1 Cmu01g1880 407386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1880 600 ProSiteProfiles GRAS family profile. 228 600 IPR005202 -
Cmu01g1880 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 599 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu01g1880 600 Coils Coil 11 31 - -
Cmu01g1880 600 Pfam GRAS domain family 238 600 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1880 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1880 Cmu-Chr1:32360723 Cmu10g1269 Cmu-Chr10:5590385 9.10E-53 dispersed
Cmu01g0606 Cmu-Chr1:6624201 Cmu01g1880 Cmu-Chr1:32360723 1.60E-46 transposed
Cmu01g1511 Cmu-Chr1:28683543 Cmu01g1880 Cmu-Chr1:32360723 8.90E-17 transposed
Cmu03g1456 Cmu-Chr3:10331796 Cmu01g1880 Cmu-Chr1:32360723 4.70E-49 transposed
Cmu03g1906 Cmu-Chr3:26282693 Cmu01g1880 Cmu-Chr1:32360723 1.60E-39 transposed
Cmu05g1241 Cmu-Chr5:13176955 Cmu01g1880 Cmu-Chr1:32360723 1.50E-44 transposed
Cmu05g1543 Cmu-Chr5:24298091 Cmu01g1880 Cmu-Chr1:32360723 1.10E-12 transposed
Cmu06g1103 Cmu-Chr6:21478128 Cmu01g1880 Cmu-Chr1:32360723 1.60E-48 transposed
Cmu07g0917 Cmu-Chr7:23286135 Cmu01g1880 Cmu-Chr1:32360723 7.60E-179 transposed
Cmu08g0505 Cmu-Chr8:16793467 Cmu01g1880 Cmu-Chr1:32360723 5.30E-35 transposed
Cmu09g0093 Cmu-Chr9:1106430 Cmu01g1880 Cmu-Chr1:32360723 3.00E-18 transposed
Cmu10g1206 Cmu-Chr10:4837602 Cmu01g1880 Cmu-Chr1:32360723 6.70E-43 transposed
Cmu11g0954 Cmu-Chr11:13186053 Cmu01g1880 Cmu-Chr1:32360723 2.10E-53 transposed
Cmu01g1880 Cmu-Chr1:32360723 Cmu07g0900 Cmu-Chr7:22827251 6.00E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2833 . 74 753 GRAS Transcription Factor Family AT2G37650 54.4 2.9e-199 692.2
Cmu03g0756 . 314 696 GRAS Transcription Factor Family AT3G46600 56.9 3.0e-127 452.6
Cmu01g1692 . 50 468 GRAS Transcription Factor Family AT3G49950 60.0 1.1e-134 476.9
Cmu07g1077 . 36 443 GRAS Transcription Factor Family AT5G41920 65.9 2.5e-147 518.8
Cmu04g0555 . 447 839 GRAS Transcription Factor Family AT5G41920 55.5 2.5e-115 412.5
Cmu01g1880 . 1 600 GRAS Transcription Factor Family AT5G66770 56.7 2.8e-171 599.0
Cmu07g0917 . 8 553 GRAS Transcription Factor Family AT5G66770 58.7 4.6e-166 581.6
Cmu10g1269 . 45 544 GRAS Transcription Factor Family AT1G50600 58.1 6.8e-161 564.3
Cmu02g0941 . 57 521 GRAS Transcription Factor Family AT1G50600 58.6 7.1e-150 527.7
Cmu01g2083 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.4e-142 503.4
Cmu01g0606 . 44 581 GRAS Transcription Factor Family AT1G14920 67.5 1.6e-205 712.6
Cmu03g1456 . 48 599 GRAS Transcription Factor Family AT1G14920 61.3 2.6e-184 642.1
Cmu05g1241 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 6.0e-157 551.2
Cmu10g1189 . 34 401 GRAS Transcription Factor Family AT1G55580 51.9 2.2e-104 376.3
Cmu03g1456 . 48 596 GRAS Transcription Factor Family AT1G66350 60.3 3.9e-177 618.2
Cmu01g0606 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cmu05g1241 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 3.9e-161 565.1
Cmu02g1999 . 251 771 GRAS Transcription Factor Family AT1G07520 50.5 6.0e-141 498.0
Cmu02g0941 . 19 518 GRAS Transcription Factor Family AT5G48150 64.0 1.1e-176 616.7
Cmu10g1269 . 17 544 GRAS Transcription Factor Family AT5G48150 58.9 1.1e-173 606.7
Cmu01g2083 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.6e-151 533.1
Cmu01g0606 . 46 578 GRAS Transcription Factor Family AT2G01570 68.4 2.1e-211 732.3
Cmu03g1456 . 49 597 GRAS Transcription Factor Family AT2G01570 62.9 2.1e-187 652.5
Cmu05g1241 . 31 555 GRAS Transcription Factor Family AT2G01570 58.2 4.0e-162 568.5
Cmu03g1456 . 48 596 GRAS Transcription Factor Family AT1G66350 60.3 3.9e-177 618.2
Cmu01g0606 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cmu05g1241 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 3.9e-161 565.1
Cmu03g1456 . 49 597 GRAS Transcription Factor Family AT3G03450 61.8 1.7e-178 622.9
Cmu01g0606 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 1.5e-171 599.7
Cmu05g1241 . 31 555 GRAS Transcription Factor Family AT3G03450 58.3 1.0e-159 560.5
Cmu03g1456 . 48 599 GRAS Transcription Factor Family AT5G17490 56.2 1.4e-158 556.6
Cmu01g0606 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 1.5e-155 546.6
Cmu05g1241 . 28 555 GRAS Transcription Factor Family AT5G17490 52.9 1.6e-138 490.0
Cmu09g0932 . 1 570 GRAS Transcription Factor Family AT1G21450 57.2 2.7e-174 609.0
Cmu10g1269 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 4.9e-115 412.1
Cmu02g0941 . 168 523 GRAS Transcription Factor Family AT1G21450 52.9 1.7e-107 387.1
Cmu03g0756 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 1.8e-128 456.8
Cmu10g2833 . 369 753 GRAS Transcription Factor Family AT5G59450 54.9 9.4e-122 434.5
Cmu01g2083 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.4e-176 615.1
Cmu02g0941 . 1 519 GRAS Transcription Factor Family AT4G17230 50.2 2.2e-135 479.6
Cmu10g1269 . 60 544 GRAS Transcription Factor Family AT4G17230 52.0 8.4e-135 477.6
Cmu02g0941 . 134 518 GRAS Transcription Factor Family AT2G04890 65.6 1.1e-145 513.5
Cmu10g1269 . 166 544 GRAS Transcription Factor Family AT2G04890 62.0 1.2e-141 500.0
Cmu01g2083 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.8e-125 445.7
Cmu05g1543 . 2 112 GRAS Transcription Factor Family AT2G04890 63.1 3.7e-37 152.9
Cmu03g1906 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 9.6e-178 620.2
Cmu05g2138 . 41 461 GRAS Transcription Factor Family AT1G50420 60.2 4.3e-138 488.4
Cmu06g0299 . 377 742 GRAS Transcription Factor Family AT4G00150 59.7 1.2e-120 430.6
Cmu10g1111 . 413 776 GRAS Transcription Factor Family AT4G00150 55.4 2.8e-104 376.3
Cmu01g1880 . 1 600 GRAS Transcription Factor Family AT3G50650 50.4 1.4e-145 513.5
Cmu07g0917 . 9 553 GRAS Transcription Factor Family AT3G50650 52.7 3.5e-144 508.8
Cmu04g0555 . 237 837 GRAS Transcription Factor Family AT3G54220 64.1 4.7e-204 708.0
Cmu07g1077 . 73 441 GRAS Transcription Factor Family AT3G54220 64.2 2.7e-135 479.6
Cmu01g1703 . 105 494 GRAS Transcription Factor Family AT4G37650 67.9 6.0e-157 551.2
Cmu02g1264 . 106 496 GRAS Transcription Factor Family AT4G37650 56.6 3.0e-124 442.6
Cmu06g0100 . 60 455 GRAS Transcription Factor Family AT4G37650 50.5 1.7e-111 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5581 PF03514 GRAS 2.00E-109 CL0063 Cmu TF