Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1880 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACGAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTTACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGTTGGTCTCGTGGACGGGGATTCCTCCGGCGACTCCTTCGGTGGTGGTTAAGGACACTCAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACTGAATCGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTATTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCATATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTTAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCAGTAAATCTCAGCCATTATGCAAAAAGCCAAGCTAAAATCCTTTTATGGAACTACGATTACAGCTCCGAGTATTCATTAATGGAATCCTCTGGGTTTCTCTCGTTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1803 49.47 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSDHNRIIFPDPPKSEPAVEPPLVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAYYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESVNLSHYAKSQAKILLWNYDYSSEYSLMESSGFLSLAWNEVPIITVSSWR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32360723 32362525 + CmPI595203_01g018800.1 Cmu01g1880 407386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1880 600 ProSiteProfiles GRAS family profile. 228 600 IPR005202 -
Cmu01g1880 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 599 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu01g1880 600 Coils Coil 11 31 - -
Cmu01g1880 600 Pfam GRAS domain family 238 600 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1880 Cmu-Chr1:32360723 Cmu10g1269 Cmu-Chr10:5590385 9.10E-53 dispersed
Cmu01g0606 Cmu-Chr1:6624201 Cmu01g1880 Cmu-Chr1:32360723 1.60E-46 transposed
Cmu01g1511 Cmu-Chr1:28683543 Cmu01g1880 Cmu-Chr1:32360723 8.90E-17 transposed
Cmu03g1456 Cmu-Chr3:10331796 Cmu01g1880 Cmu-Chr1:32360723 4.70E-49 transposed
Cmu03g1906 Cmu-Chr3:26282693 Cmu01g1880 Cmu-Chr1:32360723 1.60E-39 transposed
Cmu05g1241 Cmu-Chr5:13176955 Cmu01g1880 Cmu-Chr1:32360723 1.50E-44 transposed
Cmu05g1543 Cmu-Chr5:24298091 Cmu01g1880 Cmu-Chr1:32360723 1.10E-12 transposed
Cmu06g1103 Cmu-Chr6:21478128 Cmu01g1880 Cmu-Chr1:32360723 1.60E-48 transposed
Cmu07g0917 Cmu-Chr7:23286135 Cmu01g1880 Cmu-Chr1:32360723 7.60E-179 transposed
Cmu08g0505 Cmu-Chr8:16793467 Cmu01g1880 Cmu-Chr1:32360723 5.30E-35 transposed
Cmu09g0093 Cmu-Chr9:1106430 Cmu01g1880 Cmu-Chr1:32360723 3.00E-18 transposed
Cmu10g1206 Cmu-Chr10:4837602 Cmu01g1880 Cmu-Chr1:32360723 6.70E-43 transposed
Cmu11g0954 Cmu-Chr11:13186053 Cmu01g1880 Cmu-Chr1:32360723 2.10E-53 transposed
Cmu01g1880 Cmu-Chr1:32360723 Cmu07g0900 Cmu-Chr7:22827251 6.00E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5581 PF03514 GRAS 2.00E-109 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1880 - - - 0.0