Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1894 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACATCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTCGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1005 47.46 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTSADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32443308 32444312 + CmPI595203_01g018940.1 Cmu01g1894 407400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1894 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 328 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu01g1894 334 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 129 178 IPR006456 -
Cmu01g1894 334 MobiDBLite consensus disorder prediction 64 97 - -
Cmu01g1894 334 MobiDBLite consensus disorder prediction 1 43 - -
Cmu01g1894 334 SUPERFAMILY Homeodomain-like 266 331 IPR009057 -
Cmu01g1894 334 Gene3D - 259 331 - -
Cmu01g1894 334 MobiDBLite consensus disorder prediction 14 40 - -
Cmu01g1894 334 MobiDBLite consensus disorder prediction 79 97 - -
Cmu01g1894 334 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 128 179 IPR006456 -
Cmu01g1894 334 Pfam ZF-HD protein dimerisation region 127 179 IPR006456 -
Cmu01g1894 334 NCBIfam homeobox domain, ZF-HD class 270 327 IPR006455 -
Cmu01g1894 334 FunFam Zinc-finger homeodomain protein 2 260 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1894 Cmu-Chr1:32443308 Cmu08g1086 Cmu-Chr8:23127870 7.60E-41 dispersed
Cmu01g1894 Cmu-Chr1:32443308 Cmu07g0854 Cmu-Chr7:21680436 3.50E-46 wgd
Cmu01g1894 Cmu-Chr1:32443308 Cmu08g1440 Cmu-Chr8:26502425 7.80E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5583 PF04770 ZF-HD_dimer 9.80E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1894 - - - 0.0