Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1899 ATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCACTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGCTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGATTCGAACGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCCACGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCAACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCGGGAGATAAAGTTGTACCTTCCGAGTCAATTGAGCTACTTATCGAGGAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCGTCCCCGCACGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTATAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCGGTCGACGTTTTATCTCCCGCCTGTACGTCTAATAACAAACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGGCGGCGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACAAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAAAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCAAGACCGAGTTAGGGGACCGAGTCAGGCACGAATCAGTGATGGATATACAGAGGAGTCTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATACACAAAGTGGATGATGATCCCATTCAAATTTTCCAAGAGGAACACCAATATTTCGAGAGTTCATATGAAACCATTGTCATGTTCTCTCTAAAAGCAGAGTCTCCATTACAATCAACATGGGCCCAGACCATGTCTCTGCTTGTAAACTGCTCAAACATGAAGCAATTGAAACAAATTCACGCTCAAATGATCAAAACAGAGATCGTCACAGAACCCAAATTAGCTACAAAGTTTCTAACCCTCTGCACTTCACCCCATTTCGGCGATTTGCTTTACGCGCAAAAGGTCTTCAATGGAATCACCAGCCCCAACACTTTCATGTGGAACGCCATTATAAGAGCTTACTGTAACAGTAACGAACCAGAATTAGCATTTCTCTTGTATCAGCAAATGCTTTCTTCTTCGGTACCGCACAACTCCTACACCTTCCCTTTCGTGCTCAAAGCTTGTCGTAATTTGTCGGCCATGGGTGAGGCCCTCCAAGTTCATGGACTGGTTTTCAAACTGGGATTTGGGTCGGATGTTTTTGCATTGAATGCTCTGCTTCATGTCTACACTTTGTGTGGTGACATTAATTATGCACGCCAACTGTTTGATAATATTCCTGAAAGAGATGTTGTTTCTTGGAACATAATGATTGATGGGTATATCAAATCTGGGGATGTAAAAACGGCTTATGGGATTTTCTTGGACATGCCATTGAAAAATGTGGTCTCGTGGACGTCGCTGATTTCGGGGCTTGTTGAGGCAGGACTGAGCGTAGAAGCTTTGAATCTTTGTTATGAGATGCAGAGTGCAGGATTTGAACTTGATGGTGTTGCTATTGCGAGTTTGCTTACTGCTTGTGCAAATCTTGGAGCGTTGGATCAAGGAAGATGGCTCCATTTCTATTTGCTCAACAATGGAGTCCACATTGATCGAGTAACTGGCTGTGCTCTGGTGAATATGTACTTAAAATGTGGGGAAATGGAAGAAGCCTTTAGATTGTTTGGGAAACTGAAGAGCGATCAGAAAGATGTGTATGTTTGGACGGCCATGATCGATGGCTTTGCCATTCATGGGCGTGGAGTGGAAGCTCTGGAATGGTTTAACCGAATGCAGAGAGAAGGAATAAGACCAAATTCCATCACTTTCACTGCAGTTTTAAGGGCCTGTAGCTATGCAGGACTGGTTGAAGAAGGAAAAGTGTTATTCGAGAGCATGAGATGTCTTTACAACTTGAGCCCATCTATTGAGCATTTTGGGTGTATGGTTGATCTTTTGGGTCGAGCTGGGCTGCTGGATAAAGCGAAGGAGTTGATCAAGAAGATGCCCATGAAACCTAATGCTGTAATATGGGGAGCTTTGCTAAAGGCCTGTTGGATTCATAGAGATTTTCTGGTGGGTAGCCAAATCGGAGCCCACCTGGTGGAAGTCGATTCAGATCATAGCGGGCGGTACATTCAGTTGGCTACCATTTTAGCTGCAGAAGGTAAATGGAAAGAAGCAGCTGAAGTGAGGTTGAAGATGAAGAATCTGAGAGTCCCAATTCCCCCCGGAAAGAGTTCAATAACTTTGAATGGCGTTGTTCATGAATTTCTTGCTGGGCATCAAGATCATCCACAGATGGAGCAGATTCATTTGAAACTGAAACAGGTTGCCGAGAGGCTACGACAAGATGAAAGTTATGAACCTGTAACTAAAGATTTATTACTTGATCTTGAGAATGAGGAGAAAGAGACTACGATGGCTCAACATAGCGAGAAGTTGGCTATTGCTTTTGGATTGATCAATACGAAACCAGGAGCGACGATTCGAGTTATTAAGAATCTTAGAGTCTGTAGAGATTGTCACACTGTTGCAAAGCTCATATCTCAAATCTATTGTAGAGAGATTATAATGCGAGATAGAGTTCGATTCCATCATTTTAGAGATGGGAATTGTTCTTGCAAAGATTATTGGTAG 4143 44.36 MEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISLSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVHGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVNKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEERKKTGRKVLSHNFGSSPHVAVDCECAYGRSFLLNYKILDPDEGAFGLAMSSSVDVLSPACTSNNKLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGGGGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSKTELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSIHKVDDDPIQIFQEEHQYFESSYETIVMFSLKAESPLQSTWAQTMSLLVNCSNMKQLKQIHAQMIKTEIVTEPKLATKFLTLCTSPHFGDLLYAQKVFNGITSPNTFMWNAIIRAYCNSNEPELAFLLYQQMLSSSVPHNSYTFPFVLKACRNLSAMGEALQVHGLVFKLGFGSDVFALNALLHVYTLCGDINYARQLFDNIPERDVVSWNIMIDGYIKSGDVKTAYGIFLDMPLKNVVSWTSLISGLVEAGLSVEALNLCYEMQSAGFELDGVAIASLLTACANLGALDQGRWLHFYLLNNGVHIDRVTGCALVNMYLKCGEMEEAFRLFGKLKSDQKDVYVWTAMIDGFAIHGRGVEALEWFNRMQREGIRPNSITFTAVLRACSYAGLVEEGKVLFESMRCLYNLSPSIEHFGCMVDLLGRAGLLDKAKELIKKMPMKPNAVIWGALLKACWIHRDFLVGSQIGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKNLRVPIPPGKSSITLNGVVHEFLAGHQDHPQMEQIHLKLKQVAERLRQDESYEPVTKDLLLDLENEEKETTMAQHSEKLAIAFGLINTKPGATIRVIKNLRVCRDCHTVAKLISQIYCREIIMRDRVRFHHFRDGNCSCKDYW 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32461583 32469788 - CmPI595203_01g018990.1 Cmu01g1899 407405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1899 1380 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 648 704 IPR000727 -
Cmu01g1899 1380 Pfam Syntaxin 482 677 IPR006011 GO:0016020(InterPro)
Cmu01g1899 1380 Pfam DYW family of nucleic acid deaminases 1289 1380 IPR032867 GO:0008270(InterPro)
Cmu01g1899 1380 Gene3D - 474 605 - -
Cmu01g1899 1380 FunFam Pentatricopeptide repeat-containing protein At5g66520 776 925 - -
Cmu01g1899 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1072 1106 IPR002885 -
Cmu01g1899 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 938 972 IPR002885 -
Cmu01g1899 1380 Gene3D - 640 736 - -
Cmu01g1899 1380 CDD SynN 482 629 IPR006011 GO:0016020(InterPro)
Cmu01g1899 1380 Coils Coil 575 595 - -
Cmu01g1899 1380 Pfam PPR repeat family 1071 1118 IPR002885 -
Cmu01g1899 1380 Pfam PPR repeat family 836 883 IPR002885 -
Cmu01g1899 1380 FunFam Syntaxin 132 635 735 - -
Cmu01g1899 1380 CDD SNARE_syntaxin1-like 648 701 - -
Cmu01g1899 1380 Gene3D Tetratricopeptide repeat domain 1125 1281 IPR011990 GO:0005515(InterPro)
Cmu01g1899 1380 Gene3D Tetratricopeptide repeat domain 738 892 IPR011990 GO:0005515(InterPro)
Cmu01g1899 1380 Gene3D Tetratricopeptide repeat domain 905 1021 IPR011990 GO:0005515(InterPro)
Cmu01g1899 1380 Gene3D Tetratricopeptide repeat domain 1022 1124 IPR011990 GO:0005515(InterPro)
Cmu01g1899 1380 SUPERFAMILY t-snare proteins 478 697 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu01g1899 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 837 871 IPR002885 -
Cmu01g1899 1380 Pfam Eukaryotic protein of unknown function (DUF829) 143 380 IPR008547 -
Cmu01g1899 1380 SMART SynN_4 474 601 IPR006011 GO:0016020(InterPro)
Cmu01g1899 1380 PANTHER OS07G0578800 PROTEIN-RELATED 969 1269 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Cmu01g1899 1380 SMART tSNARE_6 637 704 IPR000727 -
Cmu01g1899 1380 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 1043 1274 - -
Cmu01g1899 1380 Pfam PPR repeat 1147 1171 IPR002885 -
Cmu01g1899 1380 Pfam PPR repeat 971 1001 IPR002885 -
Cmu01g1899 1380 Pfam PPR repeat 1045 1069 IPR002885 -
Cmu01g1899 1380 Pfam PPR repeat 940 969 IPR002885 -
Cmu01g1899 1380 Pfam E motif 1198 1250 IPR046848 -
Cmu01g1899 1380 MobiDBLite consensus disorder prediction 451 470 - -
Cmu01g1899 1380 Coils Coil 486 506 - -
Cmu01g1899 1380 NCBIfam pentatricopeptide repeat 840 870 IPR002885 -
Cmu01g1899 1380 NCBIfam pentatricopeptide repeat 971 1004 IPR002885 -
Cmu01g1899 1380 NCBIfam pentatricopeptide repeat 940 969 IPR002885 -
Cmu01g1899 1380 NCBIfam pentatricopeptide repeat 1074 1107 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0779 Cmu-Chr1:8792118 Cmu01g1899 Cmu-Chr1:32461583 1.70E-60 dispersed
Cmu01g1899 Cmu-Chr1:32461583 Cmu03g1951 Cmu-Chr3:27176391 3.30E-130 dispersed
Cmu10g2554 Cmu-Chr10:32279926 Cmu01g1899 Cmu-Chr1:32461583 1.30E-47 dispersed
Cmu01g1899 Cmu-Chr1:32461583 Cmu01g2249 Cmu-Chr1:34853841 2.00E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1899 - - - 0.0