Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1932 ATGTGGCAGTGGGAGAATGCCACCGCCGGTGCCCTCGCCGGATTTGCCACCGTCGCCGCCATGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCAAATCTCCCGACTTATAAGAATACGGCTAATGCAATCTTCACTATTACTCGGATGGAGGGCTTGAGAGGGCTATATGCAGGCTTCTATCCTGCAGTTCTCGGGTCATCTGTTTCTTGGGGTTTATATTTCTTTTTCTATGGTAGAGCCAAAGAAAGATATTCTGACAATGGAAAGAAGGACCTGAGTCCTAGTCTTCATCTTGCTTCTGCAGCGGAAGCAGGAGCTTTGGTTTGTTTTTGCACGAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTGGCCTTATGCTTCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAAGTTATTGCCAACTCGAGGTCTAAAGGGACCAGAGTGGATGCTCAAAGTTCTGGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGGAATGATGGGATCCCAAGATACATGGATAGCTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGCATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCAGCGGCTTCAATCACATTTATTGTTTGTCGGCGTTTACTTGGAGCTCGTCAGTTATCCATGGTATTGGTGGCAGAAGGAGCTGAGATGGATTCTGTGTTTACTAGCAGCCATTTGTTCAACACCATCACAAACAAGTCCAGAGGAGTTATTGTTTTGGGTTCTCTGGTGTATGTTCCTAAAGCTTCCCTAAGTTGTCTTCCACATTAA 1056 45.08 MWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTANAIFTITRMEGLRGLYAGFYPAVLGSSVSWGLYFFFYGRAKERYSDNGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPGLMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELLNSGDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVCRRLLGARQLSMVLVAEGAEMDSVFTSSHLFNTITNKSRGVIVLGSLVYVPKASLSCLPH 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32681236 32687186 + CmPI595203_01g019320.1 Cmu01g1932 407438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1932 351 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 3 298 IPR044712 GO:0006862(InterPro)|GO:0008517(PANTHER)|GO:0009941(PANTHER)|GO:0015230(PANTHER)|GO:0022857(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)|GO:1904947(PANTHER)
Cmu01g1932 351 Pfam Mitochondrial carrier protein 100 192 IPR018108 -
Cmu01g1932 351 Pfam Mitochondrial carrier protein 4 94 IPR018108 -
Cmu01g1932 351 Pfam Mitochondrial carrier protein 212 291 IPR018108 -
Cmu01g1932 351 FunFam folate transporter 1, chloroplastic isoform X1 1 96 - -
Cmu01g1932 351 SUPERFAMILY Mitochondrial carrier 4 291 IPR023395 -
Cmu01g1932 351 FunFam Folate transporter 1, chloroplastic 97 301 - -
Cmu01g1932 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 189 IPR018108 -
Cmu01g1932 351 Gene3D Mitochondrial carrier domain 1 188 IPR023395 -
Cmu01g1932 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 91 IPR018108 -
Cmu01g1932 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1932 K15115 - - csv:101204160 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1932 Cmu-Chr1:32681236 Cmu09g0529 Cmu-Chr9:4854976 2.20E-46 dispersed
Cmu01g1932 Cmu-Chr1:32681236 Cmu10g2909 Cmu-Chr10:35452782 3.50E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1048 . . . . . . . Bma15g00985 . . Cma03g00714 . . . . Cpe19g00828 Cpe10g00641 Bhi03g00909 . . . . . . Cla01g01945 . Cec04g1692 . Clacu01g2055 Cmu01g1932 . . Cone12ag0781 . . Lsi01g00639 . . Cme08g00891 . Blo06g00145 . . Bpe10g00131 . . . . Cmo03g00741 . . . . . . . . . . . . . . . . . . . . . . Csa06g03287 Chy02g00609 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010733 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32