Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1940 ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1002 50.4 MSGFFTLGGGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQQHHHHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32742786 32744009 - CmPI595203_01g019400.1 Cmu01g1940 407446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1940 333 MobiDBLite consensus disorder prediction 72 105 - -
Cmu01g1940 333 Pfam Domain of unknown function (DUF702) 112 263 - -
Cmu01g1940 333 MobiDBLite consensus disorder prediction 1 38 - -
Cmu01g1940 333 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Cmu01g1940 333 MobiDBLite consensus disorder prediction 167 192 - -
Cmu01g1940 333 MobiDBLite consensus disorder prediction 167 186 - -
Cmu01g1940 333 NCBIfam LRP1 C-terminal domain 215 262 IPR006511 -
Cmu01g1940 333 MobiDBLite consensus disorder prediction 51 105 - -
Cmu01g1940 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 327 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1940 Cmu-Chr1:32742786 Cmu09g1351 Cmu-Chr9:19959574 5.10E-53 dispersed
Cmu01g1940 Cmu-Chr1:32742786 Cmu05g1910 Cmu-Chr5:28988951 1.90E-52 wgd
Cmu01g1940 Cmu-Chr1:32742786 Cmu07g0883 Cmu-Chr7:22238864 4.30E-52 wgd
Cmu01g1940 Cmu-Chr1:32742786 Cmu08g1400 Cmu-Chr8:26158467 1.90E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5586 PF05142 DUF702 2.40E-66 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1940 K27807 - csv:101207689 499.975