Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1945 ATGGAAGCTGCGTTGAAGATGGGTGTCACGAAGGATATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTAAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTCAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCACGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG 891 50.39 MEAALKMGVTKDMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLKQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32775318 32776208 + CmPI595203_01g019450.1 Cmu01g1945 407451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1945 296 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 191 219 - -
Cmu01g1945 296 PIRSF Txn_fac_GATA_plant 13 293 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 47 100 - -
Cmu01g1945 296 Gene3D - 209 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 148 179 - -
Cmu01g1945 296 SMART GATA_3 212 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 68 100 - -
Cmu01g1945 296 Coils Coil 44 67 - -
Cmu01g1945 296 PANTHER GATA TRANSCRIPTION FACTOR 43 284 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cmu01g1945 296 CDD ZnF_GATA 217 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 FunFam GATA transcription factor 207 291 - -
Cmu01g1945 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 274 - -
Cmu01g1945 296 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1945 Cmu-Chr1:32775318 Cmu11g0395 Cmu-Chr11:4360847 7.20E-35 dispersed
Cmu01g1945 Cmu-Chr1:32775318 Cmu07g0892 Cmu-Chr7:22610457 1.50E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5587 PF00320 GATA 1.20E-16 CL0167 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1945 - - - 0.0