Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1945 ATGGAAGCTGCGTTGAAGATGGGTGTCACGAAGGATATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTAAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTCAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCACGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG 891 50.39 MEAALKMGVTKDMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLKQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32775318 32776208 + CmPI595203_01g019450.1 Cmu01g1945 407451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1945 296 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 191 219 - -
Cmu01g1945 296 PIRSF Txn_fac_GATA_plant 13 293 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 47 100 - -
Cmu01g1945 296 Gene3D - 209 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 148 179 - -
Cmu01g1945 296 SMART GATA_3 212 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 MobiDBLite consensus disorder prediction 68 100 - -
Cmu01g1945 296 Coils Coil 44 67 - -
Cmu01g1945 296 PANTHER GATA TRANSCRIPTION FACTOR 43 284 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cmu01g1945 296 CDD ZnF_GATA 217 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g1945 296 FunFam GATA transcription factor 207 291 - -
Cmu01g1945 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 274 - -
Cmu01g1945 296 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1945 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1945 Cmu-Chr1:32775318 Cmu11g0395 Cmu-Chr11:4360847 7.20E-35 dispersed
Cmu01g1945 Cmu-Chr1:32775318 Cmu07g0892 Cmu-Chr7:22610457 1.50E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1150 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.6e-69 257.7
Cmu11g1513 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.0e-67 251.1
Cmu01g1945 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.4e-42 167.5
Cmu10g1068 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.7 4.2e-139 491.9
Cmu09g1250 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.4e-134 476.9
Cmu10g1068 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5587 PF00320 GATA 1.20E-16 CL0167 Cmu TF