Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1950 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGATGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTAGAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTGGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCACGAAGAGTTGAGGGTTTCAGTTGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTGAACATGTAA 510 40.98 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLENDVKDLNAKPMEQVEKVRSQNEERGEIEKHEELRVSVVKKDYSNGDGHSKRPNKVIDLNM 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32815443 32816455 - CmPI595203_01g019500.1 Cmu01g1950 407456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1950 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu01g1950 169 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cmu01g1950 169 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cmu01g1950 169 Gene3D Classic Zinc Finger 1 95 - -
Cmu01g1950 169 MobiDBLite consensus disorder prediction 148 162 - -
Cmu01g1950 169 MobiDBLite consensus disorder prediction 148 169 - -
Cmu01g1950 169 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Cmu01g1950 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cmu01g1950 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Cmu01g1950 169 FunFam B-box zinc finger protein 19 2 92 - -
Cmu01g1950 169 CDD Bbox1_BBX-like 4 47 IPR049808 -
Cmu01g1950 169 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 133 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1950 Cmu-Chr1:32815443 Cmu07g1002 Cmu-Chr7:24755248 6.40E-20 dispersed
Cmu07g0835 Cmu-Chr7:21295967 Cmu01g1950 Cmu-Chr1:32815443 5.20E-55 transposed
Cmu01g1950 Cmu-Chr1:32815443 Cmu08g1398 Cmu-Chr8:26139667 2.70E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5589 PF00643 zf-B_box 2.80E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1950 - - - 0.0