Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g1971 ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACCCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAGTTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATGTATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCGGAAAGATGCGACGAGTCCAACGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAAAGTAAAGAAAAAAGTGTTACAGACTGCAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGTGTTGGCGACATCCCGAAACAGAACAACTGA 1200 44.83 MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHVSSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQSKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32996250 32999010 - CmPI595203_01g019710.1 Cmu01g1971 407477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g1971 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983(InterPro)
Cmu01g1971 399 MobiDBLite consensus disorder prediction 311 336 - -
Cmu01g1971 399 Gene3D - 122 225 IPR036638 GO:0046983(InterPro)
Cmu01g1971 399 SMART finulus 129 179 IPR011598 GO:0046983(InterPro)
Cmu01g1971 399 CDD bHLH_AtILR3_like 128 202 - -
Cmu01g1971 399 MobiDBLite consensus disorder prediction 341 358 - -
Cmu01g1971 399 MobiDBLite consensus disorder prediction 296 310 - -
Cmu01g1971 399 Coils Coil 163 218 - -
Cmu01g1971 399 MobiDBLite consensus disorder prediction 365 399 - -
Cmu01g1971 399 PANTHER TRANSCRIPTION FACTOR BHLH121 87 397 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cmu01g1971 399 Pfam Helix-loop-helix DNA-binding domain 124 174 IPR011598 GO:0046983(InterPro)
Cmu01g1971 399 MobiDBLite consensus disorder prediction 293 399 - -
Cmu01g1971 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1971 Cmu-Chr1:32996250 Cmu02g1136 Cmu-Chr2:23524227 4.40E-51 dispersed
Cmu01g1971 Cmu-Chr1:32996250 Cmu05g1535 Cmu-Chr5:24033478 1.10E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5593 PF00010 HLH 8.30E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g1971 - - - 0.0