Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2001 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGGTGCCGTCCTCGGACAGTATCGTACACAGTGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTGCTATGGTACAAGGATATTGGACAGCACATGAATGGGGAATTTTCAATGGCTGTAGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTCCAGCATCTAAAAAGGTTCGCCTCAGAACAACAATCAATGTCATCTGATGTGATCAAGAAAGCATTTCAAGCTACAGAAGAAGGATTCATTTCTTTAGTGACTAAACAGTGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTCATGCGATCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTCAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCACATATAGTAGTTTTGAAGCATAATGTGTGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCAGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCAGTGTATGAGCTTCAACCACATGATCAATTCATCATATTCGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAACAGGCTGTCGATATTATTCAAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAGTACGCCGCCACTTTCATGATGACATCACTGTCATAGTTGTATTTCTTGACTCGAATCTTGTAAGTAGAGCGAGCTCGGTCCAAGGCCCAACCACGTCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTTAACACAGGCTGA 1194 45.31 MLSSLMNFLRACWVPSSDSIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLKRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLMRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDIIQNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFLDSNLVSRASSVQGPTTSLRGCGVILPTKSLARCATPTELNTG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33235040 33236990 + CmPI595203_01g020010.1 Cmu01g2001 407507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2001 397 SMART PP2C_4 41 353 IPR001932 -
Cmu01g2001 397 FunFam Phosphatase 2C family protein 36 365 - -
Cmu01g2001 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Cmu01g2001 397 Pfam Protein phosphatase 2C 80 322 IPR001932 -
Cmu01g2001 397 CDD PP2Cc 48 355 IPR001932 -
Cmu01g2001 397 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu01g2001 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cmu01g2001 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cmu01g2001 397 Gene3D - 37 366 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2001 Cmu-Chr1:33235040 Cmu02g0415 Cmu-Chr2:3768399 1.60E-162 dispersed
Cmu10g2488 Cmu-Chr10:31532324 Cmu01g2001 Cmu-Chr1:33235040 4.00E-118 transposed
Cmu06g0431 Cmu-Chr6:4920685 Cmu01g2001 Cmu-Chr1:33235040 7.40E-117 transposed
Cmu01g2001 Cmu-Chr1:33235040 Cmu10g0895 Cmu-Chr10:994325 1.00E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2001 K01102 - csv:101219696 755.747