Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2008 ATGAGTTCCTGTATACCTCAAGACAACGGCTTGCTCCCGGGGTTCGTTGATCCCGAACAATCAACTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCTGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCAGTGCTCGTCTGTTGGGTGTTGTGGGCACATCATATGGCATTTGGCGACCGATTGTTCTGGCTCATTGGTAGGCCCGGCATAGCGCTGTCCGAAAGTTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTCTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTCGTGTTACTCGCTGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTCTTTGTTACACTGTGGGCGCATTCTGTATATGGGGGAATGGATTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTACAGGCAAAACTTCCCACCAAACAACATACTGCACATGGTTGGCGGTGCAGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGTGGGTCGTATTACATCGCTAGCCATTTTGAACACACATGTTTGCACTGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGGGCTATTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGGCTTGTAGACACTCTTGCAGCTGTGGTGATGGGCGTCCTCGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGAAGGTTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGCGTCTTCCACACGCACGCTGTGGCTGGTTCCATGGGAGGCCTTCTCACAGGTTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACAGTCCAGGCTTCCTGTACGCTATCTCCGATAGAAAGCTCAAAGATGGCCTCAAACAAATCGGCATCCAGTTCGCAGGAGCACTGTTTATTACCCTCTGGAATGCCATTTTTACCAGCATTATATGTTACCTGATTAGCCATATTGTTAACTTACGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCTGCTCACGGAGAAGAACCCTACGCATTGTGGGGTGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTTCCTTCATTATGCAGGTGGGATTAG 1413 49.75 MSSCIPQDNGLLPGFVDPEQSTPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHHMAFGDRLFWLIGRPGIALSESYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHYRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFAVGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAIQGIITGLVCITPGAGLVDTLAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYSPGFLYAISDRKLKDGLKQIGIQFAGALFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33285938 33287574 - CmPI595203_01g020080.1 Cmu01g2008 407514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2008 470 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu01g2008 470 PANTHER AMMONIUM TRANSPORTER MEP2 23 452 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Cmu01g2008 470 Pfam Ammonium Transporter Family 32 442 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu01g2008 470 NCBIfam ammonium transporter 30 442 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu01g2008 470 Gene3D Ammonium transporter AmtB like domains 16 445 IPR029020 -
Cmu01g2008 470 PRINTS Rhesus blood group protein signature 305 323 IPR002229 GO:0005886(InterPro)
Cmu01g2008 470 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Cmu01g2008 470 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005886(InterPro)
Cmu01g2008 470 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005886(InterPro)
Cmu01g2008 470 SUPERFAMILY Ammonium transporter 25 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2008 Cmu-Chr1:33285938 Cmu08g1245 Cmu-Chr8:24815863 9.70E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2008 K03320 - csv:101218977 919.072