Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2051 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCATCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATTGACCCACTTGGTTTCTATGCTTCCCAATCGCAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCCGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGCGTATCTGGATGCGACATGTGGGGATGA 942 47.35 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33535550 33540380 - CmPI595203_01g020510.1 Cmu01g2051 407557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2051 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Cmu01g2051 313 MobiDBLite consensus disorder prediction 1 26 - -
Cmu01g2051 313 Gene3D - 41 99 - -
Cmu01g2051 313 MobiDBLite consensus disorder prediction 191 216 - -
Cmu01g2051 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cmu01g2051 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cmu01g2051 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Cmu01g2051 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cmu01g2051 313 FunFam Myb family transcription factor 41 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2051 Cmu-Chr1:33535550 Cmu05g0357 Cmu-Chr5:3032904 3.80E-42 dispersed
Cmu01g2050 Cmu-Chr1:33528684 Cmu01g2051 Cmu-Chr1:33535550 6.90E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5597 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2051 - - - 0.0