Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2100 ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCGAAGAGCAAACCCTTATCAACCCCTTCCTCGTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCAATGATCCTAGAGTCTGAAAATGTGGAAACCTGGGAGACAGCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATTGGTAACAAATTTGCCTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAAGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAATGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACATCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTTACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCACCATTACCGGCGAGTTGTCAGCCGGCACTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGATGAGTGTGTGAAAGAGGGTCTTCCCCTTGCACACCATAGGAGATTGGTAAACCGAAACGCCATTATCGAACGCTTGAAAGCTTGCGCTTCAACCAGTTCTTCAATCCCTGTACATGCCTAA 1122 46.17 MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETAKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33827041 33828450 - CmPI595203_01g021000.1 Cmu01g2100 407606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2100 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu01g2100 373 CDD STKc_MAP3K-like 83 327 - -
Cmu01g2100 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 SUPERFAMILY Protein kinase-like (PK-like) 52 327 IPR011009 -
Cmu01g2100 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Cmu01g2100 373 MobiDBLite consensus disorder prediction 14 31 - -
Cmu01g2100 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2100 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
Cmu01g2100 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Cmu01g2100 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cmu01g2100 373 MobiDBLite consensus disorder prediction 13 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1266 Cmu-Chr1:25247538 Cmu01g2100 Cmu-Chr1:33827041 6.40E-112 dispersed
Cmu01g2100 Cmu-Chr1:33827041 Cmu01g2250 Cmu-Chr1:34863101 1.70E-89 dispersed
Cmu02g0404 Cmu-Chr2:3657743 Cmu01g2100 Cmu-Chr1:33827041 4.80E-67 transposed
Cmu08g0636 Cmu-Chr8:18554239 Cmu01g2100 Cmu-Chr1:33827041 6.10E-62 transposed
Cmu10g0888 Cmu-Chr10:942092 Cmu01g2100 Cmu-Chr1:33827041 1.80E-69 transposed
Cmu01g2100 Cmu-Chr1:33827041 Cmu03g1027 Cmu-Chr3:4825541 1.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75243 PF07714 PK_Tyr_Ser-Thr 5.30E-68 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2100 - - - 0.0