Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2113 ATGATGATGATGATGCCATTGATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACGCCGCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCAGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAGTGGCCTTACCCTTCAGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA 963 43.51 MMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33931257 33934421 + CmPI595203_01g021130.1 Cmu01g2113 407619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2113 320 CDD homeodomain 234 286 IPR001356 GO:0003677(InterPro)
Cmu01g2113 320 Gene3D - 227 289 - -
Cmu01g2113 320 FunFam Homeobox protein knotted-1-like 2 227 289 - -
Cmu01g2113 320 SMART HOX_1 224 289 IPR001356 GO:0003677(InterPro)
Cmu01g2113 320 SMART KNOX1_2 65 109 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g2113 320 Pfam KNOX2 domain 117 163 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g2113 320 SUPERFAMILY Homeodomain-like 224 298 IPR009057 -
Cmu01g2113 320 SMART ELK_2 202 223 IPR005539 GO:0003677(InterPro)
Cmu01g2113 320 SMART KNOX2_2 114 165 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g2113 320 Pfam ELK domain 202 223 IPR005539 GO:0003677(InterPro)
Cmu01g2113 320 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu01g2113 320 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g2113 320 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677(InterPro)
Cmu01g2113 320 Pfam KNOX1 domain 67 105 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g2113 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 292 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g2113 320 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2113 Cmu-Chr1:33931257 Cmu05g1806 Cmu-Chr5:28165876 9.70E-78 dispersed
Cmu01g2113 Cmu-Chr1:33931257 Cmu02g0224 Cmu-Chr2:2125033 2.10E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5601 PF03791 KNOX2 4.80E-20 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2113 - - - 0.0