Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2120 ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGCCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTTATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCAAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTGGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCGCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGCTAAACCTTGTTGA 1134 47.88 MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIDACWRSNPNWAANRQALADCAVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGWGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLAKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33972121 33975142 + CmPI595203_01g021200.1 Cmu01g2120 407626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2120 377 SMART amb_all 103 300 IPR002022 -
Cmu01g2120 377 Pfam Pectate lyase 110 294 IPR002022 -
Cmu01g2120 377 Gene3D - 29 370 IPR012334 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Cmu01g2120 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Cmu01g2120 377 PANTHER PECTATE LYASE 18-RELATED 19 372 IPR045032 GO:0030570(InterPro)
Cmu01g2120 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2120 Cmu-Chr1:33972121 Cmu03g0940 Cmu-Chr3:4044022 9.00E-123 dispersed
Cmu01g2120 Cmu-Chr1:33972121 Cmu03g1053 Cmu-Chr3:5074673 1.90E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2120 K01728 - csv:101210816 710.294