Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2122 ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTAGCCGACGAGAATCGGCTGCCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCCACTAATATTATCGCCACCACCGCCATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAACAAAATCAGGCTTCCGAACCCGCTCATGAAAGAGAGATTGGGGAGAAGAAATCGACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACAACACGGGTGAAAGCGATGAACTATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACCGCCTCCAAAAAAAGAGATCACGCGGAAATCACGGCTCCTTCCGATCACGAAAATTCCAAAAGACCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCTAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCCGTGGGTTGCCCAGTTCGTAAACAAGTCCAACGTTGTGCTGAAGATAGGACTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCGCCGGCAGCGATGGCCATGGCGTCAACTACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGCCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAATAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGGGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAGCAATACAAACACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA 1872 48.08 MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLADENRLPVNEVDFFSDKKRVVDDREDQDSKPSTNIIATTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNNTGESDELLCNSSSDERTRSGSPLNNNNTTETASKKRDHAEITAPSDHENSKRPNPREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAAVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33992635 33995005 + CmPI595203_01g021220.1 Cmu01g2122 407628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2122 623 MobiDBLite consensus disorder prediction 1 26 - -
Cmu01g2122 623 MobiDBLite consensus disorder prediction 231 271 - -
Cmu01g2122 623 FunFam probable WRKY transcription factor 31 333 410 - -
Cmu01g2122 623 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 133 592 IPR044810 GO:0003700(InterPro)
Cmu01g2122 623 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2122 623 Coils Coil 144 178 - -
Cmu01g2122 623 MobiDBLite consensus disorder prediction 272 300 - -
Cmu01g2122 623 MobiDBLite consensus disorder prediction 587 623 - -
Cmu01g2122 623 SMART WRKY_cls 348 408 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2122 623 MobiDBLite consensus disorder prediction 533 550 - -
Cmu01g2122 623 MobiDBLite consensus disorder prediction 202 223 - -
Cmu01g2122 623 MobiDBLite consensus disorder prediction 191 331 - -
Cmu01g2122 623 MobiDBLite consensus disorder prediction 127 146 - -
Cmu01g2122 623 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2122 623 MobiDBLite consensus disorder prediction 533 554 - -
Cmu01g2122 623 Gene3D WRKY domain 333 410 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2122 623 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2122 Cmu-Chr1:33992635 Cmu06g1686 Cmu-Chr6:27912671 2.90E-41 dispersed
Cmu01g2122 Cmu-Chr1:33992635 Cmu02g0205 Cmu-Chr2:2001391 4.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5602 PF03106 WRKY 5.50E-24 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2122 - - - 0.0