Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2133 ATGCGAACAAATTGGGGAGAGAAAGGAAATGTGGGCGTCAGAGTTGGTGCTCGGCCTCTATGGGCAAAGAGGGGTTCGATTTGGAGAATATTCTCTGAAACTGCGCAATGGCAGAAGCAGGCCAAATGGGAGATTTCTATACAAGGAAGAGCAATTTCTGCGCAAATCAGAGAAGTTATATTAGACAATGGATTGTTGAAGGTGACGATGTCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAATTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTTTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTGGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACACTGATTTATATCCAAGAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGACTCGACTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGCGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 2040 42.55 MRTNWGEKGNVGVRVGARPLWAKRGSIWRIFSETAQWQKQAKWEISIQGRAISAQIREVILDNGLLKVTMSNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSIQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYTDLYPRNDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSDSTLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34049365 34053789 + CmPI595203_01g021330.1 Cmu01g2133 407639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2133 679 CDD RGL4_M 376 473 IPR029413 -
Cmu01g2133 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 46 677 IPR051850 -
Cmu01g2133 679 CDD RGL4_C 487 674 - -
Cmu01g2133 679 Pfam Polysaccharide lyase family 4, domain III 485 673 IPR029411 -
Cmu01g2133 679 SUPERFAMILY Galactose-binding domain-like 482 674 IPR008979 -
Cmu01g2133 679 SUPERFAMILY Galactose mutarotase-like 61 338 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cmu01g2133 679 Pfam Rhamnogalacturonate lyase family 50 244 IPR010325 -
Cmu01g2133 679 Pfam Polysaccharide lyase family 4, domain II 401 471 IPR029413 -
Cmu01g2133 679 CDD RGL4_N 50 343 - -
Cmu01g2133 679 Gene3D - 373 475 - -
Cmu01g2133 679 SUPERFAMILY Starch-binding domain-like 371 474 IPR013784 GO:0030246(InterPro)
Cmu01g2133 679 Gene3D - 483 673 - -
Cmu01g2133 679 Gene3D - 52 347 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2133 Cmu-Chr1:34049365 Cmu11g1472 Cmu-Chr11:27020344 2.10E-199 dispersed
Cmu01g2133 Cmu-Chr1:34049365 Cmu08g1092 Cmu-Chr8:23227398 1.90E-203 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2133 K18195 - csv:101220336 1211.05