Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2156 ATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGAGGAGTTGGAAAATATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACACGAAAACGCAATTTTGAAGGCAGAAAATGAGAAGCTTCTTGCTGAGAACATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCCACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTACGGAGCGGCGGACTTTTTGCGGTCGATATCGAGGGCTTCAGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGAATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGCTGGTGGATATTTTCATGGATGCTACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCCAGAGCATCCACTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTGTGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGCATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCGACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACAGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2157 51.74 MFDPDMFDTHHHMLEELENMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLLAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFLRSISRASEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34187174 34193809 - CmPI595203_01g021560.1 Cmu01g2156 407662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2156 718 SUPERFAMILY Bet v1-like 478 710 - -
Cmu01g2156 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289(InterPro)
Cmu01g2156 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 713 IPR042160 -
Cmu01g2156 718 Gene3D - 285 457 IPR023393 -
Cmu01g2156 718 MobiDBLite consensus disorder prediction 29 54 - -
Cmu01g2156 718 SMART START_1 234 456 IPR002913 GO:0008289(InterPro)
Cmu01g2156 718 CDD START_ArGLABRA2_like 229 455 - -
Cmu01g2156 718 Pfam START domain 236 455 IPR002913 GO:0008289(InterPro)
Cmu01g2156 718 Coils Coil 98 130 - -
Cmu01g2156 718 SMART HOX_1 45 108 IPR001356 GO:0003677(InterPro)
Cmu01g2156 718 SUPERFAMILY Bet v1-like 228 457 - -
Cmu01g2156 718 CDD homeodomain 46 105 IPR001356 GO:0003677(InterPro)
Cmu01g2156 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677(InterPro)
Cmu01g2156 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677(InterPro)
Cmu01g2156 718 FunFam Homeobox-leucine zipper protein HDG1 36 120 - -
Cmu01g2156 718 Gene3D - 36 121 - -
Cmu01g2156 718 FunFam Homeobox-leucine zipper protein GLABRA 2 234 455 - -
Cmu01g2156 718 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
Cmu01g2156 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2156 Cmu-Chr1:34187174 Cmu06g0005 Cmu-Chr6:97544 3.30E-190 dispersed
Cmu01g2156 Cmu-Chr1:34187174 Cmu02g0186 Cmu-Chr2:1759032 2.00E-256 wgd
Cmu01g2156 Cmu-Chr1:34187174 Cmu02g0869 Cmu-Chr2:10740482 9.90E-264 wgd
Cmu01g2156 Cmu-Chr1:34187174 Cmu03g1092 Cmu-Chr3:5380430 6.00E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5604 PF01852 START 8.10E-47 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2156 K09338 - csv:101209093 1358.58