Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2158 ATGGCTACCCATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAAAACCTTCCCAACAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACCCATCTAAAAATGATCTACCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACACAATCGAGAAAGCCATAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAGAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCTATTTGGGGATCGGAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGAAAATGCGTATCCGAGTTGGTTGAAGAAAGGAGATCGGACATTGTTGGGGGTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTGCCAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTAGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAATTGAGCCCCGACGGCCGATGAGCAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATCGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCAGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAACCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.32 MATHQPLLLQPPKTPRSKTFPTILCLAALLCSAIFITNKFIKSNPSKNDLPFLHNICHKAYNPSSCIQMAASESPFPQEIKTTNGAHFLHSFLRKSIPKVINTIEKAIDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNRTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWGSEIGNLGELGKRENAYPSWLKKGDRTLLGVSGREMQANIVVAKDGSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITNPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34211739 34213494 - CmPI595203_01g021580.1 Cmu01g2158 407664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2158 555 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Cmu01g2158 555 PANTHER PECTINESTERASE 26 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu01g2158 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Cmu01g2158 555 CDD PMEI-like_4 57 204 - -
Cmu01g2158 555 NCBIfam pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857(InterPro)
Cmu01g2158 555 Pfam Plant invertase/pectin methylesterase inhibitor 52 176 IPR006501 GO:0004857(InterPro)
Cmu01g2158 555 Gene3D - 238 555 IPR012334 -
Cmu01g2158 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cmu01g2158 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Cmu01g2158 555 FunFam Pectinesterase 238 555 - -
Cmu01g2158 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Cmu01g2158 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cmu01g2158 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2158 Cmu-Chr1:34211739 Cmu09g0534 Cmu-Chr9:4907670 7.20E-121 dispersed
Cmu01g2158 Cmu-Chr1:34211739 Cmu09g0137 Cmu-Chr9:1534782 1.80E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2158 K01051 - csv:101216377 971.074