Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2169 ATGGGAACTCCAGAAAACCTTCTCTTCCTTTGCTTCATCGTCTTATTCATGGTTTCAACCACCGTTTCTCAAATAGAAATCAAAACCCACATATGTTCAAACAGCGGCAACTACACCAGCAACAGCATTTACAAGCAAAATCTCGACACCCTCCTTTCCACCATCGCCTCCAACACCGAAATTGATTACGGGTTTTACAATTTCTCAGCCGGACAGCAACTCGACAAGGTTAACGCCATCGCCCTTTGCCTGGCCGATCTGACGGTGGAGAAATGCAGGAGCTGTCTCCAAAATTCGACTCGAAGGATTCTAGAGGATTGTCCCAACCAGAAGGAGGCTATCGGATGGTACACCGATTGCATGATTCGTTACTCAAATAGATCAATATTTGGCGTTGGGAACGATCAAGTGCTTAGGCCAACTTTTATTTCCGGTCGGACTGCATCAGACGTAGTTGGGTACACTCAATCGCTAAGCAGTTTGTTGCAAAGACTAAGAAATCAGGCTGCATCTGGGGATTCTAAACACAAATTCGCAGTGGGTGAAATGCCAGCCCCTAATTTGGATACCATATTTGGGTTTCTTCAATGTACTCCCGATTTGTCCTCTGTGGATTGCAATAATTGTCTCATGAAGGCCGCTGAAAATGTTCCAAATGGAAGTACAGGAACGAGGATATTTTCGACCAGCTGCTTTTTGAGATTTGAGACGAACGATCTTTTCTATAACACTCTGTCGCCGCCTCCCACTGCTGGTGGCGCTCCTTCCCCACCCATGTCGCCGCCGCCGCCTCTGCCTCCAACGCCAGAAAATACGGCTAGAACTGTTACTATCGTTGTGGTGTCTATCGTTTCTGTCATCATTGTTCTCCTTGTTGTCATTTTCATCGTTTTGAGGTTGAGGAAGCGAAATAACAGAAAATCAACAGACAAATTTGAAGGTGTTATTGGGGACACCACTAACGAAATTAGCAGTGTGGAGACCATTCAATTTGATTTTGAAACTATTAAAATTGCAACCAGCGATTTTTCAAGTGAAAACAAGCTGGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAACTAGCTAACGGACAATGTATAGCAGTGAAGAGACTTGCAAATAATTCACAACAAGGAGATTTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAACTTCAACATCGAAACTTGGTTAGGCTGTTGGGATTTTGCTTGCAAAGAACTGAAAGACTTCTCATATATGAGTTCGTACCAAATGCCAGCCTTGACCAATTCATATTTGATTTTGGAAAAAGGACACAATTAGATTGGGAAAGACGATTCAAAATCATAAACGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATACATCGTGATCTCAAAGCTAGTAATATTTTGTTGGATGAGGAAATGAATCCGAAGATTGCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATTTAATGCATGGCCAATTTTCAGTTAAATCAGATGTCTTCAGTTTTGGTGTTTTAATTCTTGAAATTGTGAGTGGCAAGAAAAATAGTTGCTTTCGCAATGAAGAAAAGATAGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAAGGATGGAACGACTAATAATGTCATAGATTCAACACTTAATGTTGGTTCTAGTGTTGAAATGTTAAGATGCATTCACATCGGATTATTGTGTGTTCAAGAGAATGCAGCAGATCGTCCAACGATGGCTACGGTGGTTCTAATGCTTAGTAGCATCTCTCTTACTCTTCCAGTACCTTTGGAACCAGCATTCTTTATGCACACTAACATTGATGAATCCAACACACATTCAAAGAGAAATCAGTGGTTGGAAATGAATGAGACGGCTAGTCATTCTGAAAGCATACCTCTTCAATCTTTATCCAATGAAGCTTCAATTAGTGAGCTCAACCCCCGCTAG 2031 41.56 MGTPENLLFLCFIVLFMVSTTVSQIEIKTHICSNSGNYTSNSIYKQNLDTLLSTIASNTEIDYGFYNFSAGQQLDKVNAIALCLADLTVEKCRSCLQNSTRRILEDCPNQKEAIGWYTDCMIRYSNRSIFGVGNDQVLRPTFISGRTASDVVGYTQSLSSLLQRLRNQAASGDSKHKFAVGEMPAPNLDTIFGFLQCTPDLSSVDCNNCLMKAAENVPNGSTGTRIFSTSCFLRFETNDLFYNTLSPPPTAGGAPSPPMSPPPPLPPTPENTARTVTIVVVSIVSVIIVLLVVIFIVLRLRKRNNRKSTDKFEGVIGDTTNEISSVETIQFDFETIKIATSDFSSENKLGQGGFGAVYKGKLANGQCIAVKRLANNSQQGDFEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDQFIFDFGKRTQLDWERRFKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSVKSDVFSFGVLILEIVSGKKNSCFRNEEKIEDLSSFAWKNWKDGTTNNVIDSTLNVGSSVEMLRCIHIGLLCVQENAADRPTMATVVLMLSSISLTLPVPLEPAFFMHTNIDESNTHSKRNQWLEMNETASHSESIPLQSLSNEASISELNPR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34268532 34271219 + CmPI595203_01g021690.1 Cmu01g2169 407675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2169 676 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524(InterPro)
Cmu01g2169 676 MobiDBLite consensus disorder prediction 250 269 - -
Cmu01g2169 676 Gene3D - 24 128 IPR038408 -
Cmu01g2169 676 Gene3D - 138 239 IPR038408 -
Cmu01g2169 676 Pfam Protein tyrosine and serine/threonine kinase 346 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2169 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 144 629 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu01g2169 676 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Cmu01g2169 676 SUPERFAMILY Protein kinase-like (PK-like) 322 613 IPR011009 -
Cmu01g2169 676 Gene3D Phosphorylase Kinase; domain 1 317 418 - -
Cmu01g2169 676 MobiDBLite consensus disorder prediction 246 269 - -
Cmu01g2169 676 FunFam Cysteine-rich receptor-like protein kinase 28 419 621 - -
Cmu01g2169 676 Gene3D Transferase(Phosphotransferase) domain 1 419 620 - -
Cmu01g2169 676 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2169 676 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Cmu01g2169 676 FunFam Cysteine-rich receptor-like protein kinase 10 302 418 - -
Cmu01g2169 676 CDD STKc_IRAK 349 616 - -
Cmu01g2169 676 SMART serkin_6 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2169 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2169 676 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 129 - -
Cmu01g2169 676 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Cmu01g2169 676 Pfam Salt stress response/antifungal 152 237 IPR002902 -
Cmu01g2169 676 MobiDBLite consensus disorder prediction 651 676 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2166 Cmu-Chr1:34253836 Cmu01g2169 Cmu-Chr1:34268532 4.40E-08 dispersed
Cmu01g2169 Cmu-Chr1:34268532 Cmu01g2174 Cmu-Chr1:34299511 3.30E-208 dispersed
Cmu01g2168 Cmu-Chr1:34262115 Cmu01g2169 Cmu-Chr1:34268532 3.80E-284 tandem
Cmu01g2169 Cmu-Chr1:34268532 Cmu01g2170 Cmu-Chr1:34272234 2.70E-69 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75247 PF07714 PK_Tyr_Ser-Thr 7.90E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2169 - - - 0.0